
PFRMAT AL
TARGET T0087
AUTHOR 4216-9015-4014
REMARK Predictor remarks
METHOD CASP4 submission
METHOD 
METHOD Work by Kelley LA, MacCallum RM & Sternberg MJE
METHOD Biomolecular Modelling Laboratory
METHOD Imperial Cancer Research Fund
METHOD 44 Lincoln's Inn Fields
METHOD London WC2A 3PX, England 
METHOD Tel +44-(0)20-7269-3565 / 3242
METHOD FAX +44-(0)20-7269-3534
METHOD
METHOD Using the results from the 3D-PSSM server:
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD The target appears to be composed of 2 domains, the N-terminal
METHOD domain giving quite strong Rossmann-fold signals from our
METHOD server as well as other people's methods. When we submit
METHOD the C-terminal domain by itself to the 3D-PSSM server, 
METHOD the top ranking hit is to the flavodoxin-like fold 1b1c_A
METHOD with marginal confidence.
METHOD 
METHOD The alignment has been manually adjusted to preserve 
METHOD the hydrophobic core and the continuity of the secondary 
METHOD structure elements.
METHOD 

MODEL 1
PARENT 1emd
S    2 M 1
K    3 K 2
I    4 V 3
L    5 A 4
V    6 V 5
F    7 L 6
G    8 G 7
S   14 A 8
D   15 A 9
A   16 G 10
I   17 G 11
G   18 I 12
S   19 G 13
S   20 Q 14
M   21 A 15
A   22 L 16
Y   23 A 17
A   24 L 18
Y   25 L 19
L   26 L 20
K   27 K 21
R   28 T 22
Q   29 Q 23
L   30 L 24
G   31 P 25
V   32 S 26
A   34 G 27
Q   35 S 28
A   36 E 29
V   37 L 30
A   38 S 31
L   39 L 32
G   40 Y 33
N   41 D 34
P   42 I 35
N   43 A 36
E   44 P 37
E   45 T 39
T   46 P 40
A   47 G 41
F   48 V 42
V   49 A 43
L   50 V 44
D   51 D 45
Y   52 L 46
F   53 S 47
G   54 H 48
I   55 I 49
Q   56 P 50
A   57 T 51
P   58 A 52
P   59 V 53
V   60 K 54
V   61 I 55
K   62 K 56
S   63 G 57
A   64 F 58
Q   65 A 66
A   66 L 67
E   67 E 68
G   68 G 69
A   69 A 70
K   70 D 71
Q   71 V 72
V   72 V 73
I   73 L 74
L   74 I 75
T   75 S 76
D   76 A 77
H   77 G 78
N   78 V 79
E   79 R 80
F   80 R 81
Q   81 K 82
Q   82 P 83
S   83 G 84
I   84 M 85
A   85 D 86
D   86 R 87
I   87 S 88
R   88 D 89
E   89 L 90
V   90 F 91
E   91 N 92
V   92 V 93
V   93 N 94
E   94 A 95
V   95 G 96
V   96 I 97
D   97 V 98
H   98 K 99
H   99 N 100
R   100 L 101
V  101 V 102
A  102 Q 103
N  103 Q 104
F  104 V 105
E  105 A 106
T  106 K 107
A  107 T 108
N  108 A 112
P  109 C 113
L  110 I 114
Y  111 G 115
M  112 I 116
R  113 I 117
L  114 T 118
E  115 N 119
P  116 P 120
V  117 V 121
G  118 N 122
S  119 T 123
A  120 T 124
S  121 V 125
S  122 A 126
I  123 I 127
V  124 A 128
Y  125 A 129
R  126 E 130
L  127 V 131
Y  128 L 132
K  129 K 133
E  130 K 134
N  131 A 135
G  132 G 136
V  133 V 137
I  135 Y 138
P  136 D 139
K  137 K 140
E  138 N 141
V  142 K 142
M  143 L 143
L  144 F 144
S  145 G 145
G  146 V 146
TER
PARENT 1b1c_A
L  147 G 17
I  148 R 18
S  149 N 19
D  150 I 20
T  151 I 21
L  152 V 22
L  153 F 23
L  154 Y 24
K  155 G 25
S  156 S 26
P  157 Q 27
T  158 T 28
T  159 G 29
S  162 T 30
D  163 A 31
P  164 E 32
A  165 E 33
V  166 F 34
A  167 A 35
E  168 N 36
D  169 R 37
L  170 L 38
A  171 S 39
K  172 K 40
I  173 G 49
A  174 M 50
G  175 S 51
V  176 A 52
D  177 D 53
L  178 P 54
Q  179 E 55
E  180 E 56
Y  181 Y 57
G  182 D 58
A  197 L 59
A  198 A 60
Q  199 D 61
L  200 L 62
V  201 S 63
D  202 S 64
I  203 L 65
D  204 P 66
A  205 E 67
K  206 I 68
T  207 D 69
S  213 N 70
Q  214 A 71
V  215 L 72
R  216 V 73
V  217 V 74
A  218 F 75
Q  219 C 76
V  220 M 77
N  221 A 78
T  222 T 79
V  223 Y 80
D  224 G 81
I  225 E 82
N  226 G 83
E  227 D 84
V  228 P 85
L  229 T 86
E  230 D 87
R  231 N 88
Q  232 A 89
N  233 Q 90
E  234 D 91
I  235 F 92
E  236 Y 93
E  237 D 94
A  238 W 95
I  239 L 96
K  240 Q 97
A  241 E 98
S  242 T 99
Q  243 D 100
A  244 V 101
A  245 D 102
N  246 S 104
G  247 G 105
Y  248 V 106
S  249 K 107
D  250 F 108
F  251 A 109
V  252 V 110
L  253 F 111
M  254 G 112
I  255 L 113
T  256 G 114
D  257 N 115
N  260 K 116
S  261 T 117
N  262 Y 118
S  263 E 119
E  264 H 120
I  265 F 121
L  266 N 122
A  267 A 123
L  268 M 124
G  269 G 125
N  270 K 126
N  271 Y 127
T  272 V 128
D  273 D 129
K  274 K 130
V  275 R 131
E  276 L 132
A  277 E 133
A  278 Q 134
F  279 L 135
N  280 G 136
F  281 A 137
L  283 Q 138
K  284 R 139
N  285 I 140
N  286 F 141
H  287 E 142
A  288 L 143
F  289 G 144
L  290 L 145
A  291 G 146
G  292 D 147
A  293 D 148
V  294 D 149
S  295 G 150
R  296 N 151
K  297 L 152
K  298 E 153
Q  299 E 154
V  300 D 155
V  301 F 156
P  302 I 157
Q  303 T 158
L  304 W 159
T  305 R 160
E  306 E 161
S  307 Q 162
F  308 F 163
N  309 W 164
G  310 P 165
TER
END


