
PFRMAT AL
TARGET T0087
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.92 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1bnca2
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1bnc_A
M   1     M     1 
S   2     L     2 
K   3     D     3 
I   4     K     4 
L   5     I     5 
V   6     V     6 
F   7     I     7 
G   8     A     8 
H   9     N     9 
Q  10     R    10 
G  54     G    11 
I  55     E    12 
Q  56     I    13 
A  57     A    14 
P  58     L    15 
P  59     R    16 
V  60     I    17 
V  61     L    18 
K  62     R    19 
S  63     A    20 
A  64     C    21 
Q  65     K    22 
A  66     E    23 
E  67     L    24 
G  68     G    25 
A  69     I    26 
K  70     K    27 
Q  71     T    28 
V  72     V    29 
I  73     A    30 
L  74     V    31 
T  75     H    32 
D  76     S    33 
H  77     S    34 
N  78     A    35 
E  79     D    36 
R  88     R    37 
E  89     D    38 
V  90     L    39 
E  91     K    40 
V  92     H    41 
V  93     V    42 
E  94     L    43 
V  95     L    44 
V  96     A    45 
D  97     D    46 
H  98     E    47 
H  99     T    48 
R 100     V    49 
V 101     C    50 
A 102     I    51 
N 103     G    52 
F 104     P    53 
E 105     A    54 
T 106     P    55 
A 107     S    56 
N 108     V    57 
P 109     K    58 
L 110     S    59 
Y 111     Y    60 
M 112     L    61 
R 113     N    62 
L 114     I    63 
E 115     P    64 
P 116     A    65 
V 117     I    66 
G 118     I    67 
S 119     S    68 
A 120     A    69 
S 121     A    70 
S 122     E    71 
I 123     I    72 
V 124     T    73 
N 262     G    74 
S 263     A    75 
E 264     V    76 
I 265     A    77 
L 266     I    78 
A 267     H    79 
L 268     P    80 
G 269     G    81 
N 270     Y    82 
N 271     G    83 
T 272     F    84 
D 273     L    85 
K 274     S    86 
V 275     E    87 
E 276     N    88 
A 277     A    89 
A 278     N    90 
F 279     F    91 
N 280     A    92 
F 281     E    93 
T 282     Q    94 
L 283     V    95 
K 284     E    96 
N 285     R    97 
N 286     S    98 
H 287     G    99 
A 288     F   100 
F 289     I   101 
L 290     F   102 
A 291     I   103 
G 292     G   104 
A 293     P   105 
V 294     K   106 
S 295     A   107 
R 296     E   108 
K 297     T   109 
K 298     I   110 
Q 299     R   111 
V 300     L   112 
V 301     M   113 
P 302     G   114 
TER
END

