
PFRMAT AL
TARGET T0087
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=4.51 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1pmi
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1pmi
M   1     L     6 
S   2     F     7 
K   3     R     8 
I   4     I     9 
L   5     Q    10 
V   6     C    11 
G   8     G    12 
H   9     Y    13 
Q  10     Q    14 
N  11     N    15 
P  12     Y    16 
D  13     D    17 
S  14     W    18 
D  15     G    19 
A  16     K    20 
I  17     I    21 
G  18     G    22 
S  19     S    23 
S  20     S    24 
M  21     S    25 
A  22     A    26 
Y  23     V    27 
A  24     A    28 
Y  25     Q    29 
L  26     F    30 
K  27     V    31 
R  28     H    32 
Q  29     N    33 
L  30     S    34 
G  31     D    35 
V  32     P    36 
D  33     S    37 
A  34     I    38 
Q  35     T    39 
A  36     I    40 
V  37     L    49 
A  38     W    50 
L  39     M    51 
G  40     G    52 
N  41     T    53 
P  42     H    54 
N  43     P    55 
E  44     S    56 
E  45     V    57 
T  46     P    58 
A  47     S    59 
F  48     K    60 
V  49     A    61 
L  50     I    62 
D  51     D    63 
Y  52     L    64 
F  53     N    65 
G  54     N    66 
I  55     Q    67 
Q  56     T    68 
A  57     L    69 
P  58     R    70 
P  59     D    71 
V  60     L    72 
V  61     V    73 
K  62     T    74 
S  63     A    75 
A  64     K    76 
Q  65     P    77 
A  66     Q    78 
E  67     E    79 
G  68     Y    80 
A  69     L    81 
K  70     G    82 
Q  71     E    83 
V  72     S    84 
I  73     I    85 
L  74     I    86 
T  75     T    87 
D  76     K    88 
H  77     F    89 
N  78     G    90 
E  79     S    91 
F  80     S    92 
Q  81     K    93 
Q  82     E    94 
S  83     K   100 
I  84     V   101 
A  85     L   102 
D  86     S   103 
I  87     I   104 
R  88     E   105 
E  89     K   106 
V  90     V   107 
E  91     L   108 
V  92     S   109 
V  93     I   110 
E  94     Q   111 
V  95     A   112 
V  96     H   113 
D  97     D   115 
H  98     K   116 
H  99     K   117 
R 100     L   118 
V 101     G   119 
A 102     A   120 
N 103     Q   121 
F 104     L   122 
E 105     H   123 
T 106     A   124 
A 107     A   125 
N 108     D   126 
P 109     P   127 
L 110     K   128 
Y 111     N   129 
M 112     Y   130 
R 113     P   131 
L 114     D   132 
E 115     D   133 
P 116     N   134 
V 117     H   135 
G 118     K   136 
S 119     P   137 
A 120     E   138 
S 121     M   139 
S 122     A   140 
I 123     I   141 
V 124     A   142 
Y 125     V   143 
R 126     T   144 
L 127     D   145 
Y 128     F   146 
K 129     E   147 
E 130     G   148 
N 131     F   149 
G 132     C   150 
V 133     K   153 
A 134     P   154 
I 135     L   155 
P 136     D   156 
K 137     Q   157 
E 138     L   158 
I 139     A   159 
A 140     K   160 
G 141     T   161 
V 142     L   162 
M 143     A   163 
L 144     T   164 
S 145     V   165 
G 146     P   166 
L 147     E   167 
I 148     L   168 
S 149     N   169 
D 150     E   170 
T 151     I   171 
L 152     I   172 
L 153     G   173 
L 154     Q   174 
K 155     E   175 
S 156     L   176 
P 157     V   177 
T 158     D   178 
T 159     E   179 
H 160     F   180 
A 161     I   181 
S 162     S   182 
D 163     G   183 
P 164     I   184 
A 165     K   185 
V 166     L   186 
A 167     P   187 
E 168     A   188 
D 169     E   189 
L 170     V   190 
A 171     G   191 
K 172     S   192 
I 173     Q   193 
A 174     D   194 
G 175     D   195 
V 176     V   196 
D 177     N   197 
L 178     N   198 
Q 179     R   199 
E 180     K   200 
Y 181     L   201 
G 182     L   202 
L 183     Q   203 
A 184     K   204 
M 185     V   205 
L 186     F   206 
K 187     G   207 
A 188     K   208 
G 189     L   209 
T 190     M   210 
N 191     N   211 
L 192     T   212 
A 193     D   213 
S 194     D   214 
K 195     D   215 
T 196     V   216 
A 197     I   217 
A 198     K   218 
Q 199     Q   219 
L 200     Q   220 
V 201     T   221 
D 202     A   222 
I 203     K   223 
D 204     L   224 
A 205     L   225 
K 206     E   226 
T 207     R   227 
F 208     T   228 
E 209     D   229 
L 210     R   230 
N 211     E   231 
G 212     P   232 
S 213     Q   233 
Q 214     V   234 
V 215     F   235 
R 216     K   236 
V 217     D   237 
A 218     I   238 
Q 219     D   239 
V 220     S   240 
N 221     R   241 
T 222     L   242 
V 223     P   243 
D 224     E   244 
I 225     L   245 
N 226     I   246 
E 227     Q   247 
V 228     R   248 
L 229     L   249 
E 230     N   250 
R 231     K   251 
Q 232     Q   252 
N 233     F   253 
E 234     P   254 
I 235     N   255 
E 236     D   256 
E 237     I   257 
A 238     G   258 
I 239     L   259 
K 240     F   260 
A 241     C   261 
S 242     G   262 
Q 243     C   263 
A 244     L   264 
A 245     L   265 
N 246     L   266 
G 247     N   267 
Y 248     H   268 
S 249     V   269 
D 250     G   270 
F 251     L   271 
V 252     A   276 
L 253     M   277 
M 254     F   278 
I 255     L   279 
T 256     Q   280 
D 257     A   281 
I 258     A   286 
L 259     Y   287 
N 260     I   288 
S 261     S   289 
N 262     G   290 
S 263     D   291 
E 264     I   292 
I 265     I   293 
L 266     E   294 
A 267     C   295 
L 268     M   296 
G 269     A   297 
N 270     A   298 
N 271     S   299 
T 272     D   300 
D 273     N   301 
K 274     V   302 
V 275     V   303 
E 276     R   304 
A 277     A   305 
A 278     G   306 
F 279     F   307 
N 280     T   308 
F 281     P   309 
T 282     K   310 
L 283     F   311 
K 284     K   312 
N 285     D   313 
N 286     V   314 
H 287     K   315 
A 288     N   316 
F 289     L   317 
L 290     V   318 
A 291     E   319 
G 292     M   320 
A 293     L   321 
V 294     T   322 
S 295     V   328 
R 296     E   329 
K 297     K   330 
K 298     Q   331 
Q 299     K   332 
V 300     M   333 
V 301     P   334 
P 302     L   335 
Q 303     Q   336 
L 304     E   337 
T 305     F   338 
E 306     P   339 
S 307     R   340 
F 308     S   341 
N 309     K   342 
G 310     G   343 
TER
END

