
PFRMAT AL
TARGET T0087
AUTHOR 7770-2312-5826
REMARK GROUP NAME: SHESTOPALOV. EXPERT GROUP.
REMARK GROUP LEADER: Shestopalov Boris V. TEAM: NO.
REMARK E-mail: shest@mail.cytspb.rssi.ru
METHOD Secondary structures predicted by DOUBLET CODE METHOD
METHOD (see SHESTOPALOV, ab initio secondary structure category)
METHOD and also various information from protein data bases are used.
METHOD Here BLAST-2 service has been fruitful (Yan P. Yuan, 
METHOD Eulenstein, O., Vingron, M. & Bork, P. 1998. Towards 
METHOD detection of orthologues in sequence databases. Bioinformatics, 
METHOD 14, 285-289).
METHOD  
MODEL  1
PARENT 2gd1_O
T 190 T 208 
N 191 G 209
L 192 A 210
A 193 A 211
S 194 K 212
K 195 A 213
T 196 V 214
A 197 A 215
A 198 L 216
Q 199 V 217
L 200 L 225
V 201 N 226
D 202 G 227
I 203 M 228
D 204 A 229
A 205 M 230
K 206 R 231
T 207 V 232
N 211 P 233
G 212 T 234
S 213 P 235
Q 214 N 236
V 215 V 237
R 216 S 238
V 217 V 239
A 218 V 240
Q 219 D 241
V 220 L 242
V 223 V 243 
D 224 A 244
I 225 E 245
N 226 L 246
E 227 V 252
V 228 E 253
L 229 E 254
E 230 V 255
R 231 N 256
Q 232 A 257
N 233 A 258
E 234 L 259
I 235 K 260
E 236 A 261
E 237 A 262
A 238 A 263
I 239 E 264
K 240 G 265
A 241 E 266
S 242 L 267
Q 243 K 268
A 244 G 269
A 245 I 270
M 254 L 271
I 255 A 272
T 256 Y 273
D 257 S 274
I 258 E 275
L 259 E 276
N 260 P 277
S 261 L 278
N 262 V 279
S 263 S 280
E 264 S 290
I 265 T 291
L 266 I 292
A 267 D 293
L 268 A 294
G 269 L 295
N 270 S 296
N 271 T 297
TER
END

