
PFRMAT AL
TARGET T0086
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1af5
Q  41    D  20
G  42    G  21
K  43    S  22
T  44    I  23
V  45    I  24
S  46    A  25
V  47    Q  26
T  48    I  27
M  49    K  28
I  50    P  29
R  51    N  30
E  52    Q  31
G  53    S  32
F  54    Y  33
V  55    K  34
E  56    F  35
Q  57    K  36
N  58    H  37
E  59    Q  38
I  60    L  39
P  61    S  40
E  62    L  41
E  63    T  42
L  64    F  43
P  65    Q  44
L  66    V  45
L  67    T  46
P  68    Q  47
K  69    K  48
E  70    T  49
S  71    Q  50
R  72    R  51
Y  73    R  52
W  74    W  53
L  75    F  54
R  76    L  55
E  77    G  56
I  78    K  57
L  79    L  58
L  80    V  59
C  81    D  60
A  82    E  61
D  83    I  62
G  84    G  63
E  85    V  64
P  86    G  65
W  87    Y  66
L  88    V  67
A  89    R  68
G  90    D  69
R  91    R  70
T  92    G  71
V  93    S  72
V  94    V  73
P  95    S  74
V  96    D  75
S  97    Y  76
T  98    I  77
L  99    L  78
S 100    S  79
G 101    E  80
P 102    I  81
E 103    K  82
L 104    L  84
A 105    H  85
L 106    N  86
Q 107    F  87
K 108    L  88
L 109    T  89
G 110    Q  90
K 111    L  91
T 112    Q  92
P 113    P  93
L 114    F  94
G 115    L  95
R 116    K  96
Y 117    L  97
L 118    K  98
F 119    Q  99
T 120    K 100
S 121    Q 101
S 122    A 102
T 123    N 103
L 124    L 104
T 125    V 105
R 126    L 106
D 127    K 107
F 128    I 108
I 129    I 109
E 130    E 110
I 131    Q 111
G 132    L 112
R 133    L 123
D 134    E 124
A 135    V 125
G 136    C 126
L 137    T 127
W 138    W 128
G 139    V 129
R 140    D 130
R 141    Q 131
TER
END

