

PFRMAT AL
TARGET T0086
AUTHOR 9885-9936-6780
METHOD Smith-Waterman alignment of
METHOD secondary structure annotated
METHOD sequence.
MODEL 1
PARENT 1udc
I   17   T  144
P   18   P  145
A   19   Q  146
D   21   S  147
P   22   P  148
Q   23   Y  149
L   24   G  150
L   25   K  151
D   26   S  152
W   27   K  153
L   28   L  154
L   29   M  155
L   30   V  156
E   31   E  157
D   32   Q  158
S   33   I  159
M   34   L  160
T   35   T  161
K   36   D  162
R   37   L  163
F   38   Q  164
E   39   K  165
Q   40   A  166
Q   41   Q  167
G   42   P  168
K   43   D  169
T   44   S  171
V   45   I  172
S   46   A  173
V   47   L  174
T   48   L  175
M   49   R  176
I   50   Y  177
R   51   F  178
E   52   N  179
G   53   G  182
F   54   A  183
V   55   H  184
E   56   P  185
Q   57   S  186
N   58   G  187
E   59   D  188
I   60   M  189
P   61   G  190
E   62   E  191
E   63   D  192
L   64   P  193
P   65   Q  194
L   66   G  195
L   67   I  196
P   68   P  197
K   69   N  198
E   70   N  199
Y   73   L  200
L   75   M  201
R   76   P  202
E   77   Y  203
I   78   I  204
L   79   A  205
L   80   Q  206
C   81   V  207
A   82   A  208
D   83   V  209
G   84   G  210
E   85   R  211
P   86   D  213
W   87   S  214
L   88   L  215
A   89   D  226
G   90   G  227
R   91   T  228
T   92   G  229
V   93   V  230
V   94   R  231
P   95   Y  233
V   96   I  234
S   97   M  237
T   98   D  238
L   99   L  239
S  100   A  240
G  101   G  242
P  102   H  243
E  103   V  244
L  104   V  245
A  105   A  246
L  106   M  247
Q  107   E  248
K  108   K  249
L  109   L  250
G  110   A  251
K  111   N  252
T  112   K  253
P  113   P  254
G  115   G  255
R  116   V  256
Y  117   H  257
L  118   I  258
F  119   Y  259
T  120   N  260
S  121   G  262
S  122   A  263
T  123   G  264
L  124   V  265
T  125   V  269
R  126   L  270
D  127   D  271
F  128   V  272
I  129   V  273
E  130   N  274
I  131   F  276
G  132   S  277
R  133   K  278
A  135   A  279
G  136   G  281
L  137   K  282
G  139   P  283
R  140   V  284
R  141   N  285
S  142   Y  286
R  143   H  287
L  144   F  288
L  146   A  289
S  147   P  290
G  148   R  291
K  149   R  292
P  150   E  293
L  151   G  294
L  152   D  295
L  153   L  296
T  154   P  297
E  155   A  298
L  156   Y  299
F  157   W  300
L  158   A  301
P  159   D  302
A  160   A  303
TER
END

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Ajay K. Royyuru, PhD                   Phone: (914) 945-1335
Research Staff Member                    Fax: (914) 945-4104
Computational Biology Center          mailto:ajayr@us.ibm.com
IBM Research                                 --- IBM Internal ---
T. J. Watson Research Center           Phone: T/L 862-1335
P.O. Box 218, Route 134                  Fax: T/L 862-4104
Yorktown Heights, NY 10598            Office: 13-106D



