
PFRMAT AL
TARGET T0086
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1czp_A
K   43 A 1
T   44 T 2
V   45 F 3
S   46 K 4
V   47 V 5
T   48 T 6
M   49 L 7
I   50 I 8
R   51 N 9
E   52 E 10
G   53 A 11
F   54 E 12
V   55 G 13
E   56 T 14
Q   57 K 15
N   58 H 16
E   59 E 17
I   60 I 18
P   61 P 21
E   62 D 22
E   63 D 23
L   64 E 24
P   65 Y 25
L   66 I 26
L   67 L 27
P   68 P 38
K   69 F 39
E   70 S 40
S   71 C 41
R   72 R 42
I   78 A 43
L   79 G 44
L   80 A 45
C   81 C 46
A   82 S 47
D   83 T 48
G   84 C 49
E   85 A 50
P   86 G 51
W   87 K 52
L   88 L 53
A   89 V 54
G   90 S 55
R   91 G 56
T   92 T 57
V   93 V 58
P   95 D 59
V   96 Q 60
S   97 S 61
T   98 D 62
L   99 Q 63
S  100 S 64
G  101 F 65
P  102 L 66
E  103 D 67
L  104 D 68
A  105 D 69
L  106 Q 70
Q  107 I 71
K  108 E 72
L  109 A 73
G  110 G 74
Y  117 Y 75
L  118 V 76
F  119 L 77
T  120 T 78
S  121 C 79
S  122 V 80
T  123 A 81
L  124 Y 82
T  125 P 83
R  126 T 84
D  127 S 85
F  128 D 86
I  129 V 87
E  130 V 88
I  131 I 89
G  132 H 92
R  133 K 93
D  134 E 94
A  135 E 95
G  136 D 96
L  137 L 97
W  138 Y 98
TER
END

