
PFRMAT AL
TARGET T0086
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1av4
E   16 E 97
I   17 L 98
P   18 P 99
A   19 V 100
L   20 L 101
D   21 E 102
P   22 E 103
Q   23 E 106
L   24 V 107
L   25 V 108
D   26 E 109
W   27 Q 110
L   28 L 111
L   29 L 112
L   30 A 113
E   31 T 114
D   32 D 115
S   33 E 116
M   34 W 118
T   35 L 119
K   36 K 120
R   37 A 121
F   38 L 122
E   39 A 123
Q   40 A 124
Q   41 R 125
G   42 N 126
K   43 L 127
T   44 D 128
V   45 V 129
S   46 S 130
V   47 V 134
T   48 A 135
M   49 P 136
I   50 L 137
R   51 S 138
E   52 A 139
G   53 G 140
F   54 V 141
V   55 F 142
E   56 E 143
Q   57 Y 144
N   58 A 145
E   59 E 146
I   60 E 147
P   61 R 148
E   62 G 149
E   63 R 150
L   64 R 151
P   65 I 152
L   66 L 153
L   67 F 162
P   68 P 163
K   69 E 164
E   70 D 165
S   71 S 166
Y   73 A 167
W   74 W 168
G   84 A 169
E   85 H 170
P   86 P 171
L   88 V 172
A   89 D 173
G   90 G 174
T   92 L 175
V   93 V 176
V   94 A 177
P   95 Y 178
V   96 V 179
S   97 D 180
T   98 V 181
L   99 V 182
S  100 S 183
G  101 K 184
P  102 E 185
E  103 V 186
L  104 T 187
A  105 R 188
L  106 V 189
Q  107 I 190
K  108 D 191
L  109 T 192
G  110 G 193
K  111 P 196
T  112 V 197
P  113 P 198
L  114 A 199
G  115 E 200
R  116 H 201
Y  117 G 202
L  118 N 203
F  119 Y 204
T  120 T 205
S  121 D 206
S  122 P 207
T  123 E 208
L  124 L 209
T  125 T 210
R  126 G 211
TER
END

