
PFRMAT AL
TARGET T0086
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1ha1
D   21 E 8
P   22 P 9
Q   23 E 10
L   24 Q 11
L   25 L 12
D   26 R 13
W   27 K 14
L   28 L 15
L   29 F 16
L   30 T 25
E   31 D 26
D   32 E 27
S   33 S 28
M   34 L 29
T   35 R 30
K   36 S 31
R   37 H 32
F   38 F 33
E   39 E 34
Q   40 Q 35
Q   41 W 36
G   42 G 37
K   43 T 38
T   44 L 39
V   45 T 40
S   46 D 41
V   47 C 42
T   48 V 43
M   49 V 44
I   50 M 45
R   51 R 46
P   65 D 47
L   66 P 48
L   67 N 49
P   68 T 50
K   69 K 51
E   70 R 52
S   71 S 53
R   72 R 54
Y   73 A 62
W   74 T 63
L   75 V 64
R   76 E 65
E   77 E 66
I   78 V 67
L   79 D 68
L   80 A 69
C   81 A 70
A   82 M 71
D   83 N 72
G   84 A 73
E   85 R 74
P   86 P 75
W   87 H 76
L   88 V 78
A   89 D 79
G   90 G 80
R   91 R 81
T   92 V 82
V   93 V 83
V   94 E 84
P   95 P 85
V   96 K 86
S   97 R 87
T   98 A 88
L   99 V 89
S  100 S 90
G  101 R 91
P  102 E 92
TER
END

