PFRMAT AL 
TARGET T0085 
AUTHOR 4139-4764-1095 
METHOD 1) Entrez was searched for "cytochrome c554" and it was found 
METHOD    through medline that the heme-binding part is homologous 
METHOD    to 1prc. 
METHOD 2) Secondary structure was predicted with Predator    
METHOD 3) We used hidden Markov models that use both secondary structure  
METHOD    and sequence for fold recognition.    
METHOD    Since 1prc also was found using ssHMMs it was used for the  
METHOD    alignment of model2. 
MODEL 2 
PARENT 1prc_C 
A   1	H  91 
D   2	D  92 
A   3	E  93 
P   4	N  94 
F   5	N  95 
E   6	L  96 
G   7	A  97 
R   8	S  98 
K   9	E  99 
K  10	A 100 
C  11	K 101 
S  12	Y 102 
S  13	P 103 
C  14	Y 104 
H  15	V 105 
K  16	V 106 
A  17	A 107 
Q  18	R 108 
A  19	R 109 
Q  20	M 110 
S  21	L 111 
W  22	E 112 
K  23	M 113 
D  24	T 114 
T  25	R 115 
A  26	A 116 
H  27	I 117 
A  28	N 118 
K  29	T 119 
A  30	N 120 
M  31	W 121 
E  32	T 122 
S  33	Q 123 
L  34	H 124 
K  35	V 125 
P  36	A 126 
N  37	Q 127 
V  38	T 128 
K  39	G 129 
K  40	V 130 
E  41	T 131 
A  42	C 132 
K  43	Y 133 
Q  44	T 134 
K  45	C 135 
A  46	H 136 
K  47	R 137 
L  48	G 138 
D  49	T 139 
P  50	P 140 
A  51	L 141 
K  52	V 145 
D  53	R 146 
Y  54	Y 147 
T  55	L 148 
Q  56	E 149 
D  57	P 150 
K  58	T 151 
D  59	L 152 
C  60	P 153 
V  61	L 154 
G  62	N 155 
C  63	N 156 
H  64	R 157 
V  65	E 158 
D  66	T 159 
G  67	P 160 
F  68	T 161 
G  69	H 162 
Q  70	V 163 
K  71	E 164 
G  72	R 165 
G  73	V 166 
Y  74	E 167 
T  75	T 168 
I  76	R 169 
E  77	S 170 
S  78	G 171 
P  79	Y 172 
K  80	V 173 
P  81	V 174 
M  82	R 175 
L  83	L 176 
T  84	A 177 
G  85	K 178 
V  86	Y 179 
G  87	T 180 
C  88	A 181 
E  89	Y 182 
S  90	S 183 
C  91	A 184 
H  92	L 185 
G  93	N 186 
P  94	Y 187 
G  95	D 188 
R  96	P 189 
N  97	F 190 
F  98	T 191 
R  99	M 192 
G 100	F 193 
D 101	L 194 
H 102	A 195 
R 103	N 196 
K 104	D 197 
S 105	K 198 
G 106	R 199 
Q 107	Q 200 
A 108	V 201 
F 109	R 202 
E 110	V 203 
K 111	V 204 
S 112	P 205 
G 113	Q 206 
K 114	T 207 
K 115	A 208 
T 116	L 209 
P 117	P 210 
R 118	L 211 
K 119	V 214 
D 120	S 215 
L 121	R 216 
A 122	G 217 
K 123	K 218 
K 124	E 219 
G 125	R 220 
Q 126	R 221 
D 127	P 222 
F 128	L 223 
H 129	S 224 
F 130	D 225 
E 131	A 226 
E 132	Y 227 
R 133	A 228 
C 134	T 229 
S 135	F 230 
A 136	A 231 
C 137	L 232 
H 138	M 233 
L 139	M 234 
N 140	S 235 
Y 141	I 236 
E 142	S 237 
G 143	D 238 
S 144	S 239 
P 145	L 240 
W 146	G 241 
K 147	T 242 
G 148	N 243 
A 149	C 244 
K 150	T 245 
A 151	F 246 
P 152	C 247 
Y 153	H 248 
T 154	N 249 
P 155	A 250 
F 156	Q 251 
T 157	T 252 
P 158	F 253 
E 159	E 254 
V 160	S 255 
D 161	W 256 
A 162	G 257 
K 163	K 258 
Y 164	K 259 
T 165	S 260 
F 166	T 261 
K 167	P 262 
F 168	Q 263 
D 169	R 264 
E 170	A 265 
M 171	I 266 
V 172	A 267 
K 173	W 268 
E 174	W 269 
V 175	G 270 
K 176	I 271 
A 177	R 272 
M 178	M 273 
H 179	V 274 
E 180	R 275 
H 181	D 276 
Y 182	L 277 
K 183	N 278 
L 184	M 279 
E 185	N 280 
G 186	Y 281 
V 187	L 282 
F 188	A 283 
E 189	P 284 
G 190	L 285 
E 191	N 286 
P 192	A 287 
K 193	S 288 
F 194	L 289 
K 195	P 290 
F 196	A 291 
H 197	S 292 
D 198	R 293 
E 199	L 294 
F 200	G 295 
Q 201	R 296 
A 202	Q 297 
S 203	G 298 
A 204	E 299 
K 205	A 300 
P 206	P 301 
A 207	Q 302 
K 208	A 303 
K 209	D 304 
TER 
END 
