PFRMAT AL 
TARGET T0084 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1lga_B 
C    1 G   64 
G    2 G   65 
G    3 G   66 
R    4 A   67 
E    5 D   68 
G    6 G   69 
V    7 S   70 
L    8 I   71 
K    9 M   72 
K   10 I   73 
L   11 F   74 
R   12 D   75 
A   13 T   76 
V   14 I   77 
E   15 E   78 
N   16 T   79 
E   17 A   80 
L   18 F   81 
H   19 H   82 
Y   20 P   83 
N   21 N   84 
K   22 I   85 
S   23 G   86 
L   24 L   87 
L   25 D   88 
E   26 E   89 
E   27 V   90 
V   28 V   91 
D   30 A   92 
E   31 M   93 
L   32 Q   94 
Q   33 K   95 
K   34 P   96 
M   35 F   97 
R   36 V   98 
Q   37 Q   99 
TER 
END 
