PFRMAT AL 
TARGET T0083 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK SW:CYNS_SYNP7              5 .............ITEQLLKAKKAKGITFTELEQLLGRDEVWIASVFYRQ 
REMARK SW:CYNS_ECOLI              1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQ 
REMARK SW:CYNS_SYNY3              1 MAGTEIS.....AITTKLLEAKKAKGITFADLEQLLGRDEVWIAAVIYRQ 
REMARK GP:AE000678_10             2 ..RSDIGR.....LSKYLIERKKNLGLTWEDVSRKLGKSPVYCAMLFYGY 
REMARK GP:AB004568_1              9 .............VTNQLLAVKSASGKTFSQLAAETGLTNVYVAQLLRRQ 
REMARK    
REMARK SW:CYNS_SYNP7             42 STASPEEAEKLLTAL.GLDLALADELTTPPVKGCLEPVIPTDPLIYRFYE 
REMARK SW:CYNS_ECOLI             51 QALPADAARLVGAKL.DLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYE 
REMARK SW:CYNS_SYNY3             46 ASASVDEAEKLLHCL.GLSDDLVPELTAPSVKG.LGPVVPTDPLIYRFYE 
REMARK GP:AE000678_10            45 AQADDEEVKAVAELL.NLEEKELAELKDAPYREPQQPVPPTDPFVYRLYE 
REMARK GP:AB004568_1             46 AQLKPDTVPKLKEALPALTDELIGDMMSPPWRS.YDPNLIQEPTIYRLNE 
REMARK    
REMARK SW:CYNS_SYNP7             91 IMQVYGLPLKDVIQEKFGDGIMSAIDFTLDVDKVEDPK.GDRVKVTMCGK 
REMARK SW:CYNS_ECOLI            100 MLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGK 
REMARK SW:CYNS_SYNY3             94 IMQVYGMPMKEVIHEKFGDGIMSAIDFTLDIEKEADPK.GDRVKVTMNGK 
REMARK GP:AE000678_10            94 VVILYGPALKDVAHEMFGDGIMSAIDMSVELEKVEQEG.AERMVLTFNGK 
REMARK GP:AB004568_1             95 AVMHFGESIKEIINEDFGDGIMSAIDFYCSVDKIKGVDGNNRVVVTLDGK 
REMARK    
REMARK SW:CYNS_SYNP7            140 FLAYK.. 
REMARK SW:CYNS_ECOLI            150 YLPTKPF 
REMARK SW:CYNS_SYNY3            143 FLPYK.. 
REMARK GP:AE000678_10           143 WLKYRKF 
REMARK GP:AB004568_1            145 YLS.... 
REMARK    
REMARK    
REMARK File: t0083.fitprf 
REMARK Search results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1lic                +   5.33   3.31  131. !  Resolution=1.60  131 residues ADIPOCYTE LIPID-BINDING PROTEIN COMPLEXED WITH 
REMARK pdb90:1pkm                +   5.23   3.26  519. !  Resolution=2.60  519 residues MOL_ID: 1; 
REMARK pdb90:1pmpA               +   5.13   3.21  131. ! Resolution=2.70  131 residues P2 MYELIN PROTEIN (P2) 
REMARK pdb90:1isaA               +   4.68   2.98  192. ! Resolution=1.80  192 residues IRON(II) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0083.pep                  1 MIQSQINR.NIRLD..LADAILLSKAKKDLSFAEIADGTGLAEAFVTAAL 
REMARK 1PKM                     348 MLSGETAKGDYPLEAVRMQHLIAREAEAAMFHRKLFEELVRGSSHSTDLM 
REMARK   Consensus                1 MIRTEIGR.DIRLD..LTDQLLEVKKAKGMTFAELEQMLGMDEVYVAQLF 
REMARK    
REMARK t0083.pep                 48 LGQQALPADAARL.VGAKL.DLDEDSILLLQMIPLRGC....IDDRIPTD 
REMARK 1PKM                     398 EAMAMGSVEASYKCLAAALIVLTESGRSAHQVARYRPRAPIIAVTRNHQT 
REMARK   Consensus               51 YRQAQLKPDEVRK.LMEALPGLDEDLIGELMTPPWRGC....FDPVIPTD 
REMARK    
REMARK t0083.pep                 92 PTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGER 
REMARK 1PKM                     448 ARQAHLYR..GIFPVVCKDPVQEAWAEDVDLRVNLAMNVGKARGFFKHGD 
REMARK   Consensus              101 PLIYRFYEIMMVYGMPLKDIIHEKFGDGIMSAIDFYLDVDKIEDPDGGDR 
REMARK    
REMARK t0083.pep                142 AVITLDGKYLPTKPF 
REMARK 1PKM                     496 VVIVLTGWRPG.SGF 
REMARK   Consensus              151 VVVTLDGKYLPYKPF 
REMARK    
REMARK   Consensus              201  
REMARK    
MODEL 1  
PARENT 1PKM 
M   1    M 359 
I   2    L 360 
Q   3    S 361 
S   4    G 362 
Q   5    E 363 
I   6    T 364 
N   7    A 365 
R   8    K 366 
N   9    D 368 
I  10    Y 369 
R  11    P 370 
L  12    L 371 
D  13    E 372 
L  14    R 375 
A  15    M 376 
D  16    Q 377 
A  17    H 378 
I  18    L 379 
L  19    I 380 
L  20    A 381 
S  21    R 382 
K  22    E 383 
A  23    A 384 
K  24    E 385 
K  25    A 386 
D  26    A 387 
L  27    M 388 
S  28    F 389 
F  29    H 390 
A  30    R 391 
E  31    K 392 
I  32    L 393 
A  33    F 394 
D  34    E 395 
G  35    E 396 
T  36    L 397 
G  37    V 398 
L  38    R 399 
A  39    G 400 
E  40    S 401 
A  41    S 402 
F  42    H 403 
V  43    S 404 
T  44    T 405 
A  45    D 406 
A  46    L 407 
L  47    M 408 
L  48    E 409 
G  49    A 410 
Q  50    M 411 
Q  51    A 412 
A  52    M 413 
L  53    G 414 
P  54    S 415 
A  55    V 416 
D  56    E 417 
A  57    A 418 
A  58    S 419 
R  59    Y 420 
L  60    K 421 
V  61    L 423 
G  62    A 424 
A  63    A 425 
K  64    A 426 
L  65    L 427 
D  66    V 429 
L  67    L 430 
D  68    T 431 
E  69    E 432 
D  70    S 433 
S  71    G 434 
I  72    R 435 
L  73    S 436 
L  74    A 437 
L  75    H 438 
Q  76    Q 439 
M  77    V 440 
I  78    A 441 
P  79    R 442 
L  80    Y 443 
R  81    R 444 
G  82    P 445 
C  83    R 446 
I  84    A 451 
D  85    V 452 
D  86    T 453 
R  87    R 454 
I  88    N 455 
P  89    H 456 
T  90    Q 457 
D  91    T 458 
P  92    A 459 
T  93    R 460 
M  94    Q 461 
Y  95    A 462 
R  96    H 463 
F  97    L 464 
Y  98    Y 465 
E  99    R 466 
Q 102    G 467 
V 103    I 468 
Y 104    F 469 
G 105    P 470 
T 106    V 471 
T 107    V 472 
L 108    C 473 
K 109    K 474 
A 110    D 475 
L 111    P 476 
V 112    V 477 
H 113    Q 478 
E 114    E 479 
K 115    A 480 
F 116    W 481 
G 117    A 482 
D 118    E 483 
G 119    D 484 
I 120    V 485 
I 121    D 486 
S 122    L 487 
A 123    R 488 
I 124    V 489 
N 125    N 490 
F 126    L 491 
K 127    A 492 
L 128    M 493 
D 129    N 494 
V 130    V 495 
K 131    G 496 
K 132    K 497 
V 133    A 498 
A 134    R 499 
D 135    G 500 
P 136    F 501 
E 137    F 502 
G 138    K 503 
G 139    H 504 
E 140    G 505 
R 141    D 506 
A 142    V 507 
V 143    V 508 
I 144    I 509 
T 145    V 510 
L 146    L 511 
D 147    T 512 
G 148    G 513 
K 149    W 514 
Y 150    R 515 
L 151    P 516 
P 152    G 517 
K 154    S 518 
P 155    G 519 
F 156    F 520 
TER 
END 
