PFRMAT AL 
TARGET T0082 
AUTHOR 6140-7890-6093 
METHOD Chandonia & Cohen, unpublished. 
METHOD Aligned using combination of secondary structure based local 
METHOD potential (see Protein Society meeting abstract from 1998) 
METHOD and TOM potential from Defay & Cohen, JMB 
METHOD Average accuracy isn about 50% of residues aligned to 
METHOD within one residue of the "correct" structural alignment. 
METHOD (we used MINAREA, Falicov & Cohen) 
METHOD However, accuracy varies depending on the accuracy of 
METHOD secondary structure prediction (here, estimated at 77.8%) 
METHOD and the actual similarity of the two structures.  At this 
METHOD time, we have no better estimate for what the actual accuracy 
METHOD will be. 
MODEL 1 
PARENT 1BOL 
F 1 S 1 
D 2 S 2 
S 3 C 3 
F 4 S 4 
W 5 S 5 
F 6 T 6 
V 7 A 7 
Q 8 L 8 
Q 9 S 9 
W 10 S 21 
P 11 P 22 
P 12 E 23 
A 13 Y 24 
V 14 G 25 
C 15 L 26 
S 16 V 27 
F 17 V 28 
Q 18 L 29 
K 19 N 30 
S 20 M 31 
G 21 Q 32 
S 22 W 33 
C 23 A 34 
P 24 P 35 
G 25 G 36 
S 26 Y 37 
G 27 G 38 
L 28 P 39 
R 29 D 40 
T 30 N 41 
F 31 A 42 
T 32 F 43 
I 33 T 44 
H 34 L 45 
G 35 G 47 
L 36 L 48 
W 37 W 49 
P 38 P 50 
Q 39 K 52 
Q 40 C 53 
S 41 S 54 
G 42 G 55 
T 43 A 56 
S 44 Y 57 
L 45 A 58 
T 46 P 59 
N 47 S 60 
P 49 G 61 
G 50 G 62 
S 51 C 63 
P 52 N 66 
F 53 R 67 
D 54 A 68 
I 55 S 69 
T 56 S 70 
K 57 S 71 
I 58 I 72 
S 59 A 73 
H 60 S 74 
L 61 V 75 
Q 62 Y 84 
S 63 N 85 
Q 64 S 86 
L 65 M 87 
N 66 L 88 
T 67 T 89 
L 68 Y 90 
W 69 W 91 
P 70 P 92 
V 72 S 93 
L 73 N 94 
R 74 Q 95 
A 75 G 96 
N 76 N 97 
N 77 N 98 
Q 78 N 99 
Q 79 V 100 
F 80 F 101 
W 81 W 102 
S 82 S 103 
H 83 H 104 
E 84 E 105 
W 85 W 106 
T 86 S 107 
K 87 K 108 
H 88 H 109 
G 89 G 110 
T 90 T 111 
C 91 C 112 
S 92 V 113 
E 93 S 114 
S 94 T 115 
T 95 Y 116 
F 96 D 117 
N 97 D 129 
Q 98 I 130 
A 99 V 131 
A 100 D 132 
Y 101 Y 133 
F 102 F 134 
K 103 Q 135 
L 104 K 136 
A 105 A 137 
V 106 M 138 
D 107 D 139 
M 108 L 140 
R 109 R 141 
N 110 S 142 
N 111 Q 143 
Y 112 Y 144 
D 113 N 145 
I 114 V 146 
I 115 Y 147 
G 116 K 148 
A 117 A 149 
L 118 F 150 
R 119 S 151 
P 120 S 152 
H 121 N 153 
A 122 G 154 
A 123 I 155 
G 124 T 156 
P 125 P 157 
N 126 G 158 
G 127 G 159 
R 128 T 160 
T 129 Y 161 
K 130 T 162 
S 131 A 163 
R 132 T 164 
Q 133 E 165 
A 134 M 166 
I 135 Q 167 
K 136 S 168 
G 137 A 169 
F 138 I 170 
L 139 E 171 
K 140 S 172 
A 141 Y 173 
K 142 F 174 
G 148 G 175 
L 149 A 176 
R 150 K 177 
C 151 A 178 
R 152 K 179 
T 153 I 180 
D 154 D 181 
T 157 C 182 
K 158 S 183 
V 159 S 184 
S 160 G 185 
Y 161 T 186 
L 162 L 187 
V 163 S 188 
Q 164 D 189 
V 165 V 190 
V 166 A 191 
A 167 L 192 
C 168 Y 193 
F 169 F 194 
A 170 Y 195 
Q 171 V 196 
D 172 R 197 
G 173 G 198 
S 174 D 200 
T 175 T 201 
L 176 Y 202 
I 177 V 203 
D 178 I 204 
C 179 T 205 
T 180 D 206 
R 181 A 207 
D 182 L 208 
T 183 S 209 
C 184 T 210 
G 185 G 211 
A 186 S 212 
N 187 C 213 
F 188 S 214 
I 189 G 215 
F 190 D 216 
TER 
END 
