PFRMAT AL 
TARGET T0082 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/20/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0082" has a significant match 
REMARK pdb1isc_A     6.149     0.204     4.615  IRON(III) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1mng_A     4.575     0.162    -3.832  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 93-203: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1ofv       4.530     0.161   -10.650  FLAVODOXIN (OXIDIZED FORM) 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1opd       3.924     0.145    14.882  MOLECULE: HISTIDINE-CONTAINING PROTEIN; 
REMARK                                          SCOP: A+B; Histidine-containing phosphocarrier proteins (HPr) 
REMARK pdb1amm       3.830     0.142    -3.757  MOLECULE: GAMMA B-CRYSTALLIN; 
REMARK                                          SCOP: 1-85: Beta; Crystallins/protein S 
REMARK                                          SCOP: 86-174: Beta; Crystallins/protein S 
REMARK pdb5pal       3.582     0.136    11.155  PARVALBUMIN (ALPHA LINEAGE) 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1slv_A     3.308     0.129    15.664  MOLECULE: ECOTIN; 
REMARK pdb1rro       3.282     0.128    -9.094  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1fvk_A     3.168     0.125    -7.352  MOLECULE: DISULFIDE BOND FORMATION PROTEIN; 
REMARK                                          SCOP: 65-128: Alpha; Disulphide-bond formation facilitator (DSBA), insertion domain 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0082        FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPG 
REMARK                                                       .. |  ::. 
REMARK pdb1isc_A    .........................................SFELPALPY 
REMARK  
REMARK t0082        SPFDITKISHLQSQLNTLWPNVLRANNQQFWS..HEWTKHGTCSESTFNQ 
REMARK              :: .| |  : . .|   ::.:|.:. :||.   .    .||  |. |:: 
REMARK pdb1isc_A    AKDALAPHIS.AETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRS 
REMARK  
REMARK t0082        A..AYFKLAVDMRNNYDIIGALRPHAAG.PNGR........TKSRQAIKG 
REMARK                 ::.:||:|||:..#|: :| |: :| |.||        ::|.::||. 
REMARK pdb1isc_A    SEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKA 
REMARK  
REMARK t0082        FLKAKFGKFPG...LRCRTDPQTKVSYLVQVVACFAQDGSTLIDCTRDTC 
REMARK               |:: : | :|   : |  ...#||:: .|..  |: :|.  |#|: |.. 
REMARK pdb1isc_A    QFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVW 
REMARK  
REMARK t0082        GANFIF............................ 
REMARK               : . .                             
REMARK pdb1isc_A    EHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA 
REMARK  
PARENT 1isc_A 
G 42  S 1 
T 43  F 2 
S 44  E 3 
L 45  L 4 
T 46  P 5 
N 47  A 6 
C 48  L 7 
P 49  P 8 
G 50  Y 9 
S 51  A 10 
P 52  K 11 
F 53  D 12 
D 54  A 13 
I 55  L 14 
T 56  A 15 
K 57  P 16 
I 58  H 17 
S 59  I 18 
H 60  S 19 
Q 62  A 20 
S 63  E 21 
Q 64  T 22 
L 65  I 23 
N 66  E 24 
T 67  Y 25 
L 68  H 26 
W 69  Y 27 
P 70  G 28 
N 71  K 29 
V 72  H 30 
L 73  H 31 
R 74  Q 32 
A 75  T 33 
N 76  Y 34 
N 77  V 35 
Q 78  T 36 
Q 79  N 37 
F 80  L 38 
W 81  N 39 
S 82  N 40 
H 83  K 43 
E 84  G 44 
W 85  T 45 
T 86  A 46 
K 87  F 47 
H 88  E 48 
G 89  G 49 
T 90  K 50 
C 91  S 51 
S 92  L 52 
E 93  E 53 
S 94  E 54 
T 95  I 55 
F 96  I 56 
N 97  R 57 
Q 98  S 58 
A 99  S 59 
A 100  G 62 
Y 101  V 63 
F 102  F 64 
K 103  N 65 
L 104  N 66 
A 105  A 67 
V 106  A 68 
D 107  Q 69 
M 108  V 70 
R 109  W 71 
N 110  N 72 
N 111  H 73 
Y 112  T 74 
D 113  F 75 
I 114  Y 76 
I 115  W 77 
G 116  N 78 
A 117  C 79 
L 118  L 80 
R 119  A 81 
P 120  P 82 
H 121  N 83 
A 122  A 84 
A 123  G 85 
G 124  G 86 
P 125  P 88 
N 126  T 89 
G 127  G 90 
R 128  K 91 
T 129  F 100 
K 130  G 101 
S 131  S 102 
R 132  F 103 
Q 133  A 104 
A 134  D 105 
I 135  F 106 
K 136  K 107 
G 137  A 108 
F 138  Q 109 
L 139  F 110 
K 140  T 111 
A 141  D 112 
K 142  A 113 
F 143  A 114 
G 144  I 115 
K 145  K 116 
F 146  N 117 
P 147  F 118 
G 148  G 119 
L 149  T 123 
R 150  W 124 
C 151  L 125 
R 152  V 126 
T 153  K 127 
D 154  N 128 
P 155  S 129 
Q 156  D 130 
T 157  G 131 
K 158  K 132 
V 159  L 133 
S 160  A 134 
Y 161  I 135 
L 162  V 136 
V 163  S 137 
Q 164  T 138 
V 165  S 139 
V 166  N 140 
A 167  A 141 
C 168  G 142 
F 169  T 143 
A 170  P 144 
Q 171  L 145 
D 172  T 146 
G 173  T 147 
S 174  D 148 
T 175  A 149 
L 176  T 150 
I 177  P 151 
D 178  L 152 
C 179  L 153 
T 180  T 154 
R 181  V 155 
D 182  D 156 
T 183  V 157 
C 184  W 158 
G 185  E 159 
A 186  H 160 
N 187  A 161 
F 188  Y 162 
I 189  Y 163 
F 190  I 164 
TER 
END 
