PFRMAT AL 
TARGET T0081 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/20/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0081" has a significant match 
REMARK pdb1isc_A     5.726     0.221    11.010  IRON(III) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb2trx_A     4.914     0.196    13.523  THIOREDOXIN 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1mbd       4.394     0.180     4.914  MYOGLOBIN (DEOXY, $P*H 8.4) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1l68       4.333     0.178     3.959  LYSOZYME (E.C.3.2.1.17) (MUTANT WITH SER 44 REPLACED BY ALA, 
REMARK                                          SCOP: A+B; Lysozyme-like 
REMARK pdb1maz       3.993     0.168   -10.642  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb2gdm       3.755     0.161     1.744  MOLECULE: LEGHEMOGLOBIN (OXY); 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1fvk_A     3.715     0.159     7.785  MOLECULE: DISULFIDE BOND FORMATION PROTEIN; 
REMARK                                          SCOP: 65-128: Alpha; Disulphide-bond formation facilitator (DSBA), insertion domain 
REMARK                                          SCOP: 1-64,129-188: A/B; Thioredoxin-like 
REMARK pdb1cpq       3.592     0.156     7.603  MOLECULE: CYTOCHROME C'; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1mng_A     3.546     0.154    -0.368  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0081        .................................................. 
REMARK                                                                 
REMARK pdb1isc_A    SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGK 
REMARK  
REMARK t0081        .MELTTRTLPARKHIALVAHDHCKQMLMSWV.....ERHQPLLEQHVLYA 
REMARK               ||   :|:: .: :.||||#|. ::|||:|     ....: ||:.|    
REMARK pdb1isc_A    SLEEIIRSSE.GGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAAS 
REMARK  
REMARK t0081        TGTTGNLISRATGM......NVNAML....SGPMGGDQQVGALIS.EGKI 
REMARK              :|.   | .:|.        :.. ||    :||| #  |.:  |: :||  
REMARK pdb1isc_A    FGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA 
REMARK  
REMARK t0081        DVLIFF..WDPLNAVPHDPDVKALL.RLATVWNIPVATNVATADFIIQSP 
REMARK              :|||||  | .|||.#|..| ::|| ||..|.||  | . |.#        
REMARK pdb1isc_A    TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA....... 
REMARK  
REMARK t0081        HFNDAVDILIPDYQRYLADRLK 
REMARK                                     
REMARK pdb1isc_A    ...................... 
REMARK  
PARENT 1isc_A 
M 1  L 52 
E 2  E 53 
L 3  E 54 
T 4  I 55 
T 5  I 56 
R 6  R 57 
T 7  S 58 
L 8  S 59 
P 9  E 60 
R 11  G 61 
K 12  G 62 
H 13  V 63 
I 14  F 64 
A 15  N 65 
L 16  N 66 
V 17  A 67 
A 18  A 68 
H 19  Q 69 
D 20  V 70 
H 21  W 71 
C 22  N 72 
K 23  H 73 
Q 24  T 74 
M 25  F 75 
L 26  Y 76 
M 27  W 77 
S 28  N 78 
W 29  C 79 
V 30  L 80 
E 31  G 86 
R 32  E 87 
H 33  P 88 
Q 34  T 89 
P 35  G 90 
L 36  K 91 
L 37  V 92 
E 38  A 93 
Q 39  E 94 
H 40  A 95 
V 41  I 96 
L 42  A 97 
Y 43  A 98 
A 44  S 99 
T 45  F 100 
G 46  G 101 
T 47  S 102 
T 48  F 103 
G 49  A 104 
N 50  D 105 
L 51  F 106 
I 52  K 107 
S 53  A 108 
R 54  Q 109 
A 55  F 110 
T 56  T 111 
G 57  D 112 
M 58  A 113 
N 59  S 120 
V 60  G 121 
N 61  W 122 
A 62  T 123 
M 63  W 124 
L 64  L 125 
S 65  D 130 
G 66  G 131 
P 67  K 132 
M 68  L 133 
G 69  A 134 
G 70  I 135 
D 71  V 136 
Q 72  S 137 
Q 73  T 138 
V 74  S 139 
G 75  N 140 
A 76  A 141 
L 77  G 142 
I 78  T 143 
S 79  P 144 
E 80  T 146 
G 81  T 147 
K 82  D 148 
I 83  A 149 
D 84  T 150 
V 85  P 151 
L 86  L 152 
I 87  L 153 
F 88  T 154 
F 89  V 155 
W 90  W 158 
D 91  E 159 
P 92  H 160 
L 93  A 161 
N 94  Y 162 
A 95  Y 163 
V 96  I 164 
P 97  D 165 
H 98  Y 166 
D 99  R 167 
P 100  N 168 
D 101  A 169 
V 102  R 170 
K 103  P 171 
A 104  G 172 
L 105  Y 173 
L 106  L 174 
R 107  H 176 
L 108  F 177 
A 109  W 178 
T 110  A 179 
V 111  L 180 
W 112  V 181 
N 113  N 182 
I 114  W 183 
P 115  E 184 
V 116  F 185 
A 117  V 186 
T 118  A 187 
N 119  K 188 
V 120  N 189 
A 121  L 190 
T 122  A 191 
A 123  A 192 
TER 
END 
