PFRMAT AL 
TARGET T0080 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1onr_A 
K   80 K  270 
G   81 A  271 
H   82 R  272 
L   83 P  273 
T   84 A  274 
R   85 R  275 
L   86 I  276 
G   87 T  277 
L   88 E  278 
E   89 S  279 
F   90 E  280 
F   91 F  281 
D   92 L  282 
Q   93 W  283 
P   94 Q  284 
A   95 Q  287 
V   96 D  288 
P   97 P  289 
L   98 M  290 
A   99 A  291 
R  100 V  292 
A  101 D  293 
F  102 K  294 
L  103 L  295 
G  104 A  296 
Q  105 E  297 
V  106 G  298 
L  107 I  299 
V  108 R  300 
R  109 K  301 
R  110 F  302 
L  111 A  303 
P  112 I  304 
N  113 D  305 
G  114 Q  306 
T  115 E  307 
E  116 K  308 
L  117 L  309 
R  118 E  310 
G  119 K  311 
R  120 M  312 
I  121 I  313 
V  122 G  314 
E  123 D  315 
T  124 L  316 
E  125 L  317 
TER 
END 
