PFRMAT AL 
TARGET T0080 
AUTHOR 3873-9906-1225 
REMARK Submission 1 
REMARK Work by Gidon Moont (1) , Lawrence Kelley (1), 
REMARK Bob MacCallum (1), Marcel Turcotte (1) Mansoor Saqi (2) 
REMARK and Michael Sternberg (1) (m.sternberg@icrf.icnet.uk) 
REMARK (1) Biomolecular Modelling Laboratory, 
REMARK Imperial Cancer Research Fund 
REMARK (1) Lincoln's Inn Fields, London WC2A 3PX, UK 
REMARK (2) Bioinformatics Group, GlaxoWellcome, Stevenage, UK 
METHOD 
METHOD A starting alignment was obtained from 
METHOD : EMBO J 1990 Oct;9(10):3337-3342 
METHOD  Isolation and structure of a cDNA expressing a mammalian 
METHOD 3-methyladenine-DNA glycosylase. 
METHOD found using entrez .  This paper 
METHOD presents an al;ignment of the target  with 
METHOD the sequence of the subsequently determined 1mpg. 
METHOD 3-methyladenenine DNA glycosylase II from e coli 
METHOD The alignment is with the second domain of 1mpg 
METHOD which corresponds to all of endonuclease III 
METHOD from e coli (SCOP fold DNA glycosylase 
METHOD Alignment then modified by eye. 
MODEL 1 
PARENT 1mpg_A 
K   80 A 101 
G   81 R 102 
H   82 P 103 
L   83 G 104 
T   84 L 105 
R   85 R 106 
L   86 L 107 
G   87 P 108 
Q   93 D 112 
P   94 A 113 
A   95 F 114 
V   96 E 115 
P   97 Q 116 
L   98 G 117 
A   99 V 118 
R  100 R 119 
A  101 A 120 
F  102 I 121 
L  103 L 122 
G  104 G 123 
Q  105 Q 124 
V  106 L 125 
L  107 V 126 
V  108 S 127 
R  109 V 128 
R  110 A 129 
L  111 M 130 
P  112 A 131 
N  113 A 132 
G  114 K 133 
T  115 L 134 
E  116 T 135 
L  117 A 136 
R  118 R 137 
Y  127 Y 152 
L  128 I 153 
G  129 C 154 
P  130 F 155 
E  131 P 156 
D  132 T 157 
E  133 P 158 
A  134 Q 159 
A  135 R 160 
H  136 L 161 
S  137 A 162 
R  138 A 163 
G  139 A 164 
G  140 D 165 
R  141 P 166 
Q  142 Q 167 
T  143 A 168 
P  144 L 169 
R  145 K 170 
N  146 A 171 
R  147 L 172 
G  148 G 173 
M  149 M 174 
F  150 P 175 
M  151 L 176 
K  152 K 177 
P  153 R 178 
G  154 A 179 
T  155 E 180 
L  156 A 181 
Y  157 L 182 
V  158 I 183 
Y  159 H 184 
I  160 L 185 
I  161 A 186 
Y  162 N 187 
G  163 A 188 
C  167 P 195 
M  168 M 196 
N  169 T 197 
I  170 I 198 
S  171 P 199 
S  172 G 200 
Q  173 D 201 
G  174 V 202 
D  175 E 203 
G  176 Q 204 
A  177 A 205 
C  178 M 206 
V  179 K 207 
L  180 T 208 
L  181 L 209 
R  182 Q 210 
P  186 P 213 
L  187 G 214 
E  188 I 215 
G  189 G 216 
L  190 R 217 
E  191 W 218 
T  192 T 219 
M  193 A 220 
R  194 N 221 
Q  195 Y 222 
L  196 F 223 
R  197 A 224 
S  198 L 225 
T  199 R 226 
L  200 G 227 
R  201 W 228 
K  202 Q 229 
G  203 A 230 
T  204 K 231 
A  205 D 232 
S  206 V 233 
R  207 F 234 
V  208 L 235 
L  209 P 236 
K  210 D 237 
D  211 D 238 
R  212 Y 239 
E  213 L 240 
L  214 I 241 
C  215 K 242 
S  216 Q 243 
G  217 R 244 
P  218 F 245 
Q  223 T 249 
A  224 P 250 
L  225 A 251 
A  226 Q 252 
I  227 I 253 
N  228 R 254 
K  229 R 255 
S  230 Y 256 
F  231 A 257 
D  232 E 258 
Q  233 R 259 
R  234 W 260 
D  235 K 261 
L  236 P 262 
A  237 W 263 
Q  238 R 264 
D  239 S 265 
E  240 Y 266 
A  241 A 267 
V  242 L 268 
W  243 L 269 
L  244 H 270 
E  245 I 271 
R  246 W 272 
G  247 Y 273 
E  250 E 275 
P  251 G 276 
S  252 W 277 
E  253 Q 278 
P  254 P 279 
A  255 D 280 
V  256 E 281 
V  257 A 282 
TER 
END 
