PFRMAT AL 
TARGET T0079 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK t0079.pep                  9 MTMSRRNTDAITIHSILDWIEDNL....ESPLS...LEKVSERSGYSKWH 
REMARK PQRA_PROVU                 5 ...........VVNDILKWLETQLQ..RNEGIK...IDTIANKSGYSKWH 
REMARK RAMA_KLEPN                 7 ...........VIDTIVEWIDDNL....HQPLR...IDDIARHAGYSKWH 
REMARK SOXS_ECOLI                 2 ........HQKIIQDLIAWIDEHI....DQPLN...IDVVAKKSGYSKWY 
REMARK SOXS_SALTY                 2 ........HQQIIQTLIEWIDEHI....DQPLN...IDVVAKKSGYSKWY 
REMARK RAMA_ENTCL                 7 ...........VIDTIVEWIDDNL....HQPLR...IEDIARHAGYSKWH 
REMARK ROB_ECOLI                  3 ........QAGIIRDLLIWLEGHL....DQPLS...LDNVAAKAGYSKWH 
REMARK AARP_PROST                12 ...KHTQFQSSIISEILVWIEGNL....TNRLS...LDDIAQHSGYTKWH 
REMARK TETD_ECOLI                25 .......FHTTVIKDVLLWIEHNL....DQSLL...LDDVANKAGYTKWY 
REMARK MARA_ECOLI                 9 ........DAITIHSILDWIEDNL....ESPLS...LEKVSERSGYSKWH 
REMARK MARA_SALTY                 9 ........DAITIHSILDWIEDNL....ESPLS...LEKVSERSGYSKWH 
REMARK YKGA_ECOLI                14 ........RQKILQQLLEWIECNL....EHPIS...IEDIAQKSGYSRRN 
REMARK CAFR_YERPE                 3 ........KQMTVNSIIQYIEENL....ESKFI..NIDCLVLYSGFSRRY 
REMARK YA52_HAEIN               177 AIQQNLIEQGILFALQDKRLNTALIAILQQPQNDWHIEQLAELATMSRAN 
REMARK RHAS_SALTY               172 ............LNQLMAWLEDHF....AEEVC...WEAVAEQFSLSLRT 
REMARK RHAS_ECOLI               176 ...............LLAWLEDHF....ADEVN...WDAVADQFSLSLRT 
REMARK POCR_SALTY               194 ............MKKALRYIDAHL....SDDLR...LEDVASHVYLSPYY 
REMARK MSMR_STRMU               175 ............VNQVKKIIHSQY....GSSLR...VNDIAKKLNLSRSY 
REMARK ADAA_BACSU               101 ............VDLITEYIDKNF....TEKLT...LESLADICHGSPYH 
REMARK MELR_ECOLI               193 ............VSQMLGFIAENY....DQALT...INDVAEHVKLNANY 
REMARK FEAR_ECOLI               199 .............QKVVTLIDDNI...REEILR...PEWIAGETGMSVRS 
REMARK RHAR_ECOLI               207 ...........LLDKLITRLAASL....KSPFA...LDKFCDEASCSERV 
REMARK RHAR_SALTY                 1 ...........LLDKLITALANSL....ECPFA...LDAFCQQEQCSERV 
REMARK LUMQ_PHOLE               152 .................NYIEQHL....QKKIS...VAELSSVAFLAQSQ 
REMARK YIJO_ECOLI               170 ...........LFEAIRDYIDERY....ASALT...RESVAQAFYISPNY 
REMARK YFIF_BACSU               190 ...........LLTEVKLHIKDNL....SQPLK...LTDVASHFHISGRH 
REMARK XYLR_ECOLI               275 RSTDYRSLTDPAVIQAMHYIRNHAC....KGIK...VDQVLDAVGISRSN 
REMARK    
REMARK t0079.pep                 44 LQRMFKKETGHSLGQYIRSRKMTEIAQKLK..ESNEPILYLAERYGFESQ 
REMARK PQRA_PROVU                39 LQRIFKDFKGCTLGEYVRKRRLLEAAKSLQ..EKDMSILDIALMYGFSSQ 
REMARK RAMA_KLEPN                39 LQRLFLQYKGESLGRYIRERKLLLAARDLR..DTDQRVYDICLKYGFDSQ 
REMARK SOXS_ECOLI                37 LQRMFRTVTHQTLGDYIRQRRLLLAAVELR..TTERPIFDIAMDLGYVSQ 
REMARK SOXS_SALTY                37 LQRMFRTVTHQTLGEYIRQRRLLLAAVELR..TTERPIFDIAMDLGYVSQ 
REMARK RAMA_ENTCL                39 LQRLFLQYKGESLGRYIRERKLLLAARDLR..ESDERVYEICLRYGFESQ 
REMARK ROB_ECOLI                 38 LQRMFKDVTGHAIGAYIRARRLSKSAVALR..LTARPILDIALQYRFDSQ 
REMARK AARP_PROST                52 LQRVFRKIVGMPLGEYIRRRRICEAAKELQ..TTNLQVIDIALKYQFDSQ 
REMARK TETD_ECOLI                61 FQRLFKKVTGVTLASYIRARRLTKAAVELR..LTKKTILEIALKYQFDSQ 
REMARK MARA_ECOLI                44 LQRMFKKETGHSLGQYIRSRKMTEIAQKLK..ESNEPILYLAERYGFESQ 
REMARK MARA_SALTY                44 LQRMFKKETGHSLGQYIRSRKMTEIAQKLK..ESNEPILYLAERYGFESQ 
REMARK YKGA_ECOLI                49 IQLLFRNFMHVPLGEYIRKRRLCRAAILVR..LTAKSMLDIALSLHFDSQ 
REMARK CAFR_YERPE                39 LQISFKEYVGMPIGTYIRVRRASRAAALLR..LTRLTIIEISAKLFYDSQ 
REMARK YA52_HAEIN               227 FIRIFQQHIGMSPGRFLTKVRLQSAAFLLK..QSQQSVLAIALEVGYQSE 
REMARK RHAS_SALTY               203 LHRQLKQHTGLTPQRYLNRLRLIKARHLLR..HSDHSVTEIAYRCGFGDS 
REMARK RHAS_ECOLI               204 LHRQLKQQTGLTPQRYLNRLRLMKARHLLR..HSEASVTDIAYRCGFSDS 
REMARK POCR_SALTY               225 FSKLFKKYQGIGFNAWVNRQRMVSARELLC..HSDWSIASIARNLGFSQT 
REMARK MSMR_STRMU               206 LYKIFRKSTNLSIKEYILQVRMKRSQYLLE..NPKLSIAEISNSVGFSDS 
REMARK ADAA_BACSU               132 MHRTFKKIKGITLVEYIQQVRVHAAKKYLI..QTNKAIGDIAICVGIANA 
REMARK MELR_ECOLI               224 AMGIFQRVMQLTMKQYITAMRINHVRALLS..DTDKSILDIALTAGFRSS 
REMARK FEAR_ECOLI               230 LYRMFAD.KGLVVAQYIRNRRLDFCADAIRHAADDEKLAGIGFHWGFSDQ 
REMARK RHAR_ECOLI               239 LRQQFRQQTGMTINQYLRQVRVCHAQYLLQ..HSRLLISDISTECGFEDS 
REMARK RHAR_SALTY                33 LRAQFRAQTGMTINQYLRQVRICHAQYLLQ..HSPLMISEISMQCGFEDS 
REMARK LUMQ_PHOLE               178 FYALFKSQMGITPHQYVLRKRLDLAKQLIA..ERQKPLSQVAQLCGFSSQ 
REMARK YIJO_ECOLI               202 LSHLFQKTGAIGFNEYLNHTRLEHAKTLLK..GYDLKVKEVAHACGFVDS 
REMARK YFIF_BACSU               222 LSRLFAAELGVSYSEFVQNEKINKAAELLK..STNLSIKEIAEEIGFSVH 
REMARK XYLR_ECOLI               318 LEKRFKEEVGETIHAMIHAEKLEKARSLLI..STTLSINEISQMCGYPSL 
REMARK    
REMARK t0079.pep                 92 QTLTRTFKNYFDVPPHKYRMTNMQGESRFLHPLNHYNS 
REMARK PQRA_PROVU                87 ATFTRIFKKHFNTTPAKFR................... 
REMARK RAMA_KLEPN                87 QTFTRVFTRTFNQPPGAYRKENHSR............. 
REMARK SOXS_ECOLI                85 QTFSRVFRRQFDRTPSDYR................... 
REMARK SOXS_SALTY                85 QTFSRVFRREFDRTPSDYRH.................. 
REMARK RAMA_ENTCL                87 QTFTRIFTRTFHQPPGAYRKENHSR............. 
REMARK ROB_ECOLI                 86 QTFTRAFKKQFAQTPALYRRSPEWSAFGI......... 
REMARK AARP_PROST               100 QSFAKRFKAYLGISPSLYRLSD................ 
REMARK TETD_ECOLI               109 QSFTRRFKYIFKVTPSYYRRNKLWELEAM......... 
REMARK MARA_ECOLI                92 QTLTRTFKNYFDVPPHKYRMTNMQGESRFLHPLNHYNS 
REMARK MARA_SALTY                92 QTLTRTFKNYFDVPPHKYRITN................ 
REMARK YKGA_ECOLI                97 QSFSREFKKLFGCSPREYRHRDYWDLANI......... 
REMARK CAFR_YERPE                87 QTFTREFKKIFGYTPRQYRMIPFWSFKGLLGRR..... 
REMARK YA52_HAEIN               275 AHFCKVFKNYYQLSPSQYRKS................. 
REMARK RHAS_SALTY               251 NHFSTLFRREFNWSPRDIR................... 
REMARK RHAS_ECOLI               252 NHFSTLFRREFNWSPRDIRQ.................. 
REMARK POCR_SALTY               273 SYFCKVFRQTYQVTPQAYRQQ................. 
REMARK MSMR_STRMU               254 LAFSKAFKNYFGKSPSKFRKE................. 
REMARK ADAA_BACSU               180 PYFITLFKKKTGQTPARFRQ.................. 
REMARK MELR_ECOLI               272 SRFYSTFGKYVGMSPQQYRK.................. 
REMARK FEAR_ECOLI               279 SHFSTVFKQRFGMTPGEYRRK................. 
REMARK RHAR_ECOLI               287 NYFSVVFTRETGMTPSQWRH.................. 
REMARK RHAR_SALTY                81 NYFSVVFTRETGMTPSQWRH.................. 
REMARK LUMQ_PHOLE               226 SSFSQAFRRLYGMSPTRYQF.................. 
REMARK YIJO_ECOLI               250 NYFCRLFRKNTERSPSEYRRQYHSQLTE.......... 
REMARK YFIF_BACSU               270 .YFTRVFSAKIGSSPGLFR................... 
REMARK XYLR_ECOLI               366 QYFYSVFKKAYDTTPKEYR................... 
REMARK    
REMARK    
REMARK Search results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1bmdA               +   4.92   4.09  327. ! Resolution=1.90  327 residues MALATE DEHYDROGENASE (E.C.1.1.1.37) (BACTERIAL) CO 
REMARK pdb90:1gnwA               +   4.23   3.81  210. ! Resolution=2.20  210 residues MOL_ID: 1; 
REMARK pdb90:1ycrA               +   3.92   3.68   85. ! Resolution=2.60   85 residues MOL_ID: 1; 
REMARK pdb90:1mmg                +   3.88   3.66  741. !  Resolution=1.90  741 residues MOL_ID: 1; 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0079.pep                 13 ............IHS.ILDWIEDNL....ESPLS.....LEKVSERSGYS 
REMARK 1BMDA                     84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPA 
REMARK    
REMARK t0079.pep                 41 KWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLK...ESNEPILYLAERYG 
REMARK 1BMDA                    134 NTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTV 
REMARK    
REMARK t0079.pep                 88 FESQ..QTLTRTFKNYFDVPPHKYR 
REMARK 1BMDA                    184 WGNHSSTMFPDLFHAEVD....... 
REMARK    
REMARK    
MODEL 1  
PARENT 1BMDA 
I  13    M  95 
H  14    E  96 
S  15    R  97 
I  16    D  99 
L  17    L 100 
D  18    L 101 
W  19    Q 102 
I  20    V 103 
E  21    N 104 
D  22    G 105 
N  23    K 106 
L  24    I 107 
E  25    G 112 
S  26    R 113 
P  27    A 114 
L  28    L 115 
S  29    A 116 
L  30    D 122 
E  31    V 123 
K  32    K 124 
V  33    V 125 
S  34    L 126 
E  35    V 127 
R  36    V 128 
S  37    G 129 
G  38    N 130 
Y  39    P 131 
S  40    A 132 
K  41    N 133 
W  42    T 134 
H  43    N 135 
L  44    A 136 
Q  45    L 137 
R  46    I 138 
M  47    A 139 
F  48    Y 140 
K  49    K 141 
K  50    N 142 
E  51    A 143 
T  52    P 144 
G  53    G 145 
H  54    L 146 
S  55    N 147 
L  56    P 148 
G  57    R 149 
Q  58    N 150 
Y  59    F 151 
I  60    T 152 
R  61    A 153 
S  62    M 154 
R  63    T 155 
K  64    R 156 
M  65    L 157 
T  66    D 158 
E  67    H 159 
I  68    N 160 
A  69    R 161 
Q  70    A 162 
K  71    K 163 
L  72    A 164 
K  73    Q 165 
E  74    K 169 
S  75    T 170 
N  76    G 171 
E  77    T 172 
P  78    G 173 
I  79    V 174 
L  80    D 175 
Y  81    R 176 
L  82    I 177 
A  83    R 178 
E  84    R 179 
R  85    M 180 
Y  86    T 181 
G  87    V 182 
F  88    W 183 
E  89    G 184 
S  90    N 185 
Q  91    H 186 
Q  92    T 189 
T  93    M 190 
L  94    F 191 
T  95    P 192 
R  96    D 193 
T  97    L 194 
F  98    F 195 
K  99    H 196 
N 100    A 197 
Y 101    E 198 
F 102    V 199 
D 103    D 200 
TER 
END 
