PFRMAT AL 
TARGET T0079 
AUTHOR 3707-4066-9021 
REMARK FORESST ordered by Z scores, length ratios and J scores using 
REMARK SIMPA with homologues as secondary structure predictions. 
METHOD FORESST is a fold recognition method based on secondary structure 
METHOD predictions and hidden Markov models of observed secondary structures. 
METHOD Di Francesco V, Garnier J and Munson PJ., 1997, Protein Topology  
METHOD recognition METHOD from secondary structure sequences: application  
METHOD of the hidden Markov model to the alpha class proteins.  
METHOD J. Mol. Biol.267:446-463. 
MODEL  1 
PARENT 2hmx 
M   1    H   1 
T   2    M   2 
M   3    G   3 
S   4    A   4 
R   5    R   5 
R   6    A   6 
N   7    S   7 
T   8    V   8 
D   9    L   9 
A  10    S  10 
I  11    G  11 
T  12    G  12 
I  13    E  13 
H  14    L  14 
S  15    D  15 
I  16    K  16 
L  17    W  17 
D  18    E  18 
W  19    K  19 
I  20    I  20 
E  21    R  21 
D  22    L  22 
N  23    R  23 
L  24    P  24 
E  25    G  25 
S  26    G  26 
P  27    K  27 
L  28    K  28 
S  29    S  39 
L  30    R  40 
E  31    E  41 
K  32    L  42 
V  33    E  43 
S  34    R  44 
E  35    F  45 
R  36    A  46 
S  37    V  47 
G  38    N  48 
Y  39    P  49 
S  40    G  50 
K  41    L  51 
W  42    L  52 
H  43    E  53 
L  44    T  54 
Q  45    S  55 
R  46    E  56 
M  47    G  57 
F  48    C  58 
K  49    R  59 
K  50    Q  60 
E  51    I  61 
L  56    L  62 
G  57    G  63 
Q  58    Q  64 
Y  59    L  65 
I  60    Q  66 
R  61    P  67 
S  62    S  68 
R  63    L  69 
K  64    Q  70 
M  65    T  71 
T  66    G  72 
E  67    S  73 
I  68    E  74 
A  69    E  75 
Q  70    L  76 
K  71    R  77 
L  72    S  78 
K  73    L  79 
E  74    Y  80 
S  75    N  81 
N  76    T  82 
E  77    I  83 
P  78    A  84 
I  79    V  85 
L  80    L  86 
Y  81    Y  87 
L  82    C  88 
A  83    V  89 
E  84    H  90 
R  85    Q  91 
Y  86    R  92 
G  87    I  93 
F  88    D  94 
E  89    V  95 
S  90    K  96 
Q  91    D  97 
Q  92    T  98 
T  93    K  99 
L  94    E 100 
T  95    A 101 
R  96    L 102 
T  97    D 103 
F  98    K 104 
K  99    I 105 
N 100    E 106 
D 103    E 107 
V 104    E 108 
P 105    Q 109 
P 106    N 110 
H 107    K 111 
K 108    S 112 
Y 109    K 113 
R 110    K 114 
M 111    K 115 
T 112    A 116 
N 113    Q 117 
M 114    Q 118 
Q 115    A 119 
G 116    A 120 
E 117    A 121 
S 118    D 122 
R 119    T 123 
F 120    G 124 
L 121    N 125 
H 122    N 126 
P 123    S 127 
L 124    Q 128 
N 125    V 129 
H 126    S 130 
Y 127    Q 131 
N 128    N 132 
S 129    Y 133 
TER 
END 
