PFRMAT AL 
TARGET T0076 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/17/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0076" has a significant match 
REMARK pdb1ncx      11.927     0.452    61.875  MOLECULE: TROPONIN C; 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1scm_B     9.304     0.363    46.101  MYOSIN (REGULATORY DOMAIN) 
REMARK                                          SCOP: Alpha; EF Hand-like 
REMARK pdb1wdc_C     8.861     0.348    43.084  MOLECULE: SCALLOP MYOSIN; 
REMARK                                          SCOP: Alpha; EF Hand-like 
REMARK pdb5pal       7.951     0.317    30.113  PARVALBUMIN (ALPHA LINEAGE) 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1rro       6.105     0.255    22.838  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1mng_A     5.755     0.243    15.127  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 93-203: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb3chy       4.824     0.211    17.402  CHE*Y 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1pdr       4.701     0.207    14.951  MOLECULE: HUMAN DISCS LARGE PROTEIN; 
REMARK                                          SCOP: Beta; PDZ domain 
REMARK pdb2gdm       4.415     0.197    12.688  MOLECULE: LEGHEMOGLOBIN (OXY); 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1cpq       4.303     0.194    15.617  MOLECULE: CYTOCHROME C'; 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0076        ...............STDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACG 
REMARK                             . :   :::||: :   |.| ||# :| .|| :|| 
REMARK pdb1ncx      ASMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG 
REMARK  
REMARK t0076        QNPTLAEITEIESTLPAE....VDMEQFLQVLNRPNGFDMPGD.PEEFVK 
REMARK              |||:  || :| :::. :    |.||.|| || |#  #| | :  ||:.: 
REMARK pdb1ncx      QNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAN 
REMARK  
REMARK t0076        GFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP.VKDGMVN 
REMARK               |: |::| .| |.   |   |.: |:|:|:|:|.||||  . #|.|#|: 
REMARK pdb1ncx      CFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRID 
REMARK  
REMARK t0076        YHDFVQMILAN. 
REMARK              . .| :|: .   
REMARK pdb1ncx      FDEFLKMMEGVQ 
REMARK  
PARENT 1ncx 
S 1  E 16 
T 2  E 17 
D 3  M 18 
D 4  I 19 
S 5  A 20 
P 6  E 21 
Y 7  F 22 
K 8  K 23 
Q 9  A 24 
A 10  A 25 
F 11  F 26 
S 12  D 27 
L 13  M 28 
F 14  F 29 
D 15  D 30 
R 16  A 31 
H 17  D 32 
G 18  G 33 
T 19  G 34 
G 20  G 35 
R 21  D 36 
I 22  I 37 
P 23  S 38 
K 24  T 39 
T 25  K 40 
S 26  E 41 
I 27  L 42 
G 28  G 43 
D 29  T 44 
L 30  V 45 
L 31  M 46 
R 32  R 47 
A 33  M 48 
C 34  L 49 
G 35  G 50 
Q 36  Q 51 
N 37  N 52 
P 38  P 53 
T 39  T 54 
L 40  K 55 
A 41  E 56 
E 42  E 57 
I 43  L 58 
T 44  D 59 
E 45  A 60 
I 46  I 61 
E 47  I 62 
S 48  E 63 
T 49  E 64 
L 50  V 65 
P 51  D 66 
A 52  E 67 
E 53  D 68 
V 54  I 73 
D 55  D 74 
M 56  F 75 
E 57  E 76 
Q 58  E 77 
F 59  F 78 
L 60  L 79 
Q 61  V 80 
V 62  M 81 
L 63  M 82 
N 64  V 83 
R 65  R 84 
P 66  Q 85 
N 67  M 86 
G 68  K 87 
F 69  E 88 
D 70  D 89 
M 71  A 90 
P 72  K 91 
G 73  G 92 
D 74  K 93 
P 75  E 95 
E 76  E 96 
E 77  E 97 
F 78  L 98 
V 79  A 99 
K 80  N 100 
G 81  C 101 
F 82  F 102 
Q 83  R 103 
V 84  I 104 
F 85  F 105 
D 86  D 106 
K 87  K 107 
D 88  N 108 
A 89  A 109 
T 90  D 110 
G 91  G 111 
M 92  F 112 
I 93  I 113 
G 94  D 114 
V 95  I 115 
G 96  E 116 
E 97  E 117 
L 98  L 118 
R 99  G 119 
Y 100  E 120 
V 101  I 121 
L 102  L 122 
T 103  R 123 
S 104  A 124 
L 105  T 125 
G 106  G 126 
E 107  E 127 
K 108  H 128 
L 109  V 129 
S 110  T 130 
N 111  E 131 
E 112  E 132 
E 113  D 133 
M 114  I 134 
D 115  E 135 
E 116  D 136 
L 117  L 137 
L 118  M 138 
K 119  K 139 
G 120  D 140 
V 121  S 141 
P 122  D 142 
V 123  N 144 
K 124  N 145 
D 125  D 146 
G 126  G 147 
M 127  R 148 
V 128  I 149 
N 129  D 150 
Y 130  F 151 
H 131  D 152 
D 132  E 153 
F 133  F 154 
V 134  L 155 
Q 135  K 156 
M 136  M 157 
I 137  M 158 
L 138  E 159 
A 139  G 160 
N 140  V 161 
TER 
END 
