PFRMAT AL 
TARGET T0076 
AUTHOR 5827-4749-3439 
METHOD Threading alignment for T0076 
METHOD 
METHOD Note: this alignment was obtained automatically, and has not been 
METHOD hand-edited. 
METHOD 
METHOD This alignment was created by aligning the target sequence to a 
METHOD library of 3D-1D type threading models.  Matching and gap scores 
METHOD were optimized for discriminating remote homolog sequence-structure 
METHOD alignments from alignments on incorrect folds. 
METHOD 
METHOD This alignment scored slightly higher than the second best structure 
METHOD match, but there was a significant gap to the third best. 
METHOD 
MODEL 2 
PARENT 1scm_B 
T    2    L    12 
D    3    P    13 
D    4    Q    14 
S    5    K    15 
P    6    Q    16 
Y    7    I    17 
K    8    Q    18 
Q    9    E    19 
A    10    M    20 
F    11    K    21 
S    12    E    22 
L    13    A    23 
F    14    F    24 
D    15    S    25 
R    16    M    26 
H    17    I    27 
G    18    D    28 
T    19    V    29 
G    20    G    33 
R    21    F    34 
I    22    V    35 
P    23    S    36 
K    24    K    37 
T    25    E    38 
S    26    D    39 
I    27    I    40 
G    28    K    41 
D    29    A    42 
L    30    I    43 
L    31    S    44 
R    32    E    45 
A    33    Q    46 
C    34    L    47 
G    35    G    48 
Q    36    R    49 
N    37    A    50 
P    38    P    51 
T    39    D    52 
L    40    D    53 
A    41    K    54 
E    42    E    55 
I    43    L    56 
T    44    T    57 
E    45    A    58 
I    46    M    59 
E    47    L    60 
S    48    K    61 
T    49    E    62 
L    50    A    63 
P    51    P    64 
A    52    G    65 
E    53    P    66 
V    54    L    67 
D    55    N    68 
M    56    F    69 
E    57    T    70 
Q    58    M    71 
F    59    F    72 
L    60    L    73 
Q    61    S    74 
V    62    I    75 
L    63    F    76 
N    64    S    77 
R    65    D    78 
P    66    K    79 
N    67    L    80 
G    68    S    81 
D    70    G    82 
P    72    T    83 
G    73    D    84 
D    74    S    85 
P    75    E    86 
E    76    E    87 
E    77    T    88 
F    78    I    89 
V    79    R    90 
K    80    N    91 
G    81    A    92 
F    82    F    93 
Q    83    A    94 
V    84    M    95 
F    85    F    96 
D    86    D    97 
K    87    E    98 
D    88    Q    99 
A    89    E    100 
T    90    T    101 
G    91    K    102 
M    92    K    103 
I    93    L    104 
G    94    N    105 
V    95    I    106 
G    96    E    107 
E    97    Y    108 
L    98    I    109 
R    99    K    110 
Y    100    D    111 
V    101    L    112 
L    102    L    113 
T    103    E    114 
S    104    N    115 
L    105    M    116 
G    106    G    117 
E    107    D    118 
K    108    N    119 
L    109    F    120 
S    110    N    121 
N    111    K    122 
E    112    D    123 
E    113    E    124 
M    114    M    125 
D    115    R    126 
E    116    M    127 
L    117    T    128 
L    118    F    129 
K    119    K    130 
G    120    E    131 
V    121    A    132 
P    122    P    133 
V    123    V    134 
K    124    E    135 
D    125    G    136 
G    126    G    137 
M    127    K    138 
V    128    F    139 
N    129    D    140 
Y    130    Y    141 
H    131    V    142 
D    132    K    143 
F    133    F    144 
V    134    T    145 
Q    135    A    146 
M    136    M    147 
A    139    I    148 
N    140    K    149 
TER 
END 
