PFRMAT AL                                                                         
TARGET T0075                                                                      
REMARK ================================================================ 
AUTHOR 5601-8785-5692                                                             
REMARK Heinz Mevissen, GMD,                                                       
REMARK Ralf Thiele, GMD,                                                          
REMARK Ralf Zimmer, GMD,                                                          
REMARK German National Research Center for Information Technology                 
REMARK Institute for Algorithms and Scientific Computing                          
REMARK ================================================================ 
METHOD A reduced candidate list is produced via ToPLign [1]                       
METHOD sequence/profile alignments, 123D [2] and RDP [3].                         
METHOD The top scoring candidates from this list and the                          
METHOD corresponding refined alignments have been produced                        
METHOD with RDP [3] using newly derived modifications of                          
METHOD contact capacity [2] and pair interaction potentials.                      
METHOD References:                                                                
METHOD [1] Heinz Mevissen and Ralf Thiele and Ralf Zimmer and Thomas Lengauer:    
METHOD     "Analysis of Protein Alignments -- The software environment ToPLign",  
METHOD     GMD, 1994-98.                                                          
METHOD [2] Nick Alexandrov and Ruth Nussinov and Ralf Zimmer:                     
METHOD     "Fast Protein Fold Recognition via Sequence to Structure Alignment     
METHOD     and Contact Capacity Potentials",                                      
METHOD     Pacific Symposium on Biocomputing'96, World Scientific Publ. Co., 
METHOD     1996, 53--72.                                                          
METHOD [3] Ralf Thiele and Ralf Zimmer and Thomas Lengauer:                       
METHOD     "Recursive Dynamic Programming for Adaptive Sequence                   
METHOD     and Structure Alignment",                                              
METHOD     ISMB'95, C. Rawlings et al. (Eds.), AAAI Press, 384--392.              
REMARK ================================================================ 
MODEL  1                                                                          
PARENT 1RRO                                                                       
S  41    S     7 
K  42    A     8 
E  43    E     9 
M  44    D    10 
M  45    I    11 
S  46    A    12 
Q  47    A    13 
A  48    A    14 
L  49    L    15 
K  50    Q    16 
A  51    E    17 
T  52    E    25 
F  53    P    26 
S  54    Q    27 
G  55    K    28 
F  56    F    29 
T  57    F    30 
K  58    Q    31 
E  59    T    32 
Q  60    S    33 
G  64    G    34 
I  65    L    35 
P  66    S    36 
K  67    K    37 
W  72    M    38 
T  73    S    39 
E  74    A    40 
T  75    S    41 
H  76    Q    42 
V  77    V    43 
R  78    K    44 
D  79    D    45 
W  80    I    46 
V  81    F    47 
M  82    R    48 
W  83    F    49 
A  84    I    50 
V  85    D    51 
N  86    N    52 
E  87    D    53 
F  88    Q    54 
S  89    Y    57 
L  90    L    58 
K  91    D    59 
G  92    G    60 
F  95    L    67 
Q  96    Q    68 
K  97    K    69 
F  98    F    70 
C  99    Q    71 
M 100    S    72 
S 101    D    73 
G 102    A    74 
A 103    R    75 
A 104    E    76 
L 105    L    77 
C 106    T    78 
A 107    E    79 
L 108    S    80 
G 109    E    81 
K 110    T    82 
E 111    K    83 
C 112    S    84 
F 113    L    85 
L 114    M    86 
E 115    D    87 
L 116    A    88 
A 117    A    89 
P 118    D    90 
D 119    N    91 
G 122    G    95 
D 123    K    96 
I 124    I    97 
L 125    G    98 
W 126    A    99 
E 127    D   100 
H 128    E   101 
L 129    F   102 
E 130    Q   103 
I 131    E   104 
L 132    M   105 
Q 133    V   106 
K 134    H   107 
E 135    S   108 
TER                                                                               
END                                                                               
