PFRMAT     AL 
TARGET     T0074 
AUTHOR     4070-8855-4894 
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992). 
METHOD     For each structure in PDB25, a model is built in the following way: 
METHOD     the sequence (query) is compared with NR database using transitive 
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and 
METHOD     purged at score 150.  Those sequences are aligned with query 
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a 
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al., 
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E. 
METHOD     Lawrence).  Then, the target file is compared with the models 
METHOD     derived from PDB25. 
 
MODEL     1 
PARENT    2scp_A 
V  142    E   107 
N  143    D   108 
G  144    N   109 
F  145    N   110 
L  146    I   111 
S  147    S   112 
G  148    R   113 
D  149    D   114 
K  150    E   115 
V  151    Y   116 
K  152    G   117 
P  153    I   118 
V  154    F   119 
L  155    F   120 
L  156    G   121 
N  157    M   122 
S  158    L   123 
K  159    G   124 
L  160    L   125 
P  161    D   126 
V  162    K   127 
D  163    T   128 
I  164    M   129 
L  165    A   130 
G  166    P   131 
R  167    A   132 
V  168    S   133 
W  169    F   134 
E  170    D   135 
L  171    A   136 
S  172    I   137 
D  173    D   138 
I  174    T   139 
D  175    N   140 
H  176    N   141 
D  177    D   142 
G  178    G   143 
M  179    L   144 
L  180    L   145 
D  181    S   146 
R  182    L   147 
D  183    E   148 
E  184    E   149 
F  185    F   150 
A  186    V   151 
V  187    I   152 
A  188    A   153 
M  189    G   154 
F  190    S   155 
L  191    D   156 
V  192    F   157 
Y  193    F   158 
C  194    M   159 
A  195    N   160 
L  196    D   161 
E  197    G   162 
K  198    D   163 
E  199    S   164 
P  200    T   165 
V  201    N   166 
P  202    K   167 
M  203    V   168 
S  204    F   169 
L  205    W   170 
P  206    G   171 
P  207    P   172 
A  208    L   173 
L  209    V   174 
TER 
END 
