PFRMAT AL 
TARGET T0071 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK SW:ADAA_MOUSE            740 ADELLNKFVCKNSGVLFENQLLQI.......GVKSEFRQNLGRMYLFYGN 
REMARK SW:ADAC_RAT              700 SEDNFARFVCKNNGVLFENQLLQI.......GLKSEFRQNLGRMFIFYGN 
REMARK PIR:S11276               701 SEDNFARFVCKNNGVLFENQLLQI.......GLKSEFRQNLGRMFIFYGN 
REMARK PIR:B30111               701 SEDNFARFVCKNNGVLFENQLLQI.......GLKSEFRQNLGRMFIFYGN 
REMARK GP:AF006990_1            323 SEDNFARFVCKNNGVLFENQLLQI.......GLKSEFRQNLGRMFIFYGN 
REMARK SW:ADAC_MOUSE            701 SEDNFARFVCKNNGVLFENQLLQI.......GLKSEFRQNLGRMFIFYGN 
REMARK GP:DMALPADPT_1           709 ......KFLFKNNGVLFENEMLQI.......GVKSEFRQNLGRLGLFYGN 
REMARK GP:DMALPADAP_1           708 ......KFVSKNNGVLFENGKLQI.......GVKSEFRQNLGRLGFSNGN 
REMARK GP:CELT20B5_2            667 ..DDYLKFVTKSNAILWEDDYIQI.......GCKLETRNNLGRLGMFYGN 
REMARK GP:AB004536_1            337 ..........KDKGILYQDSQIQI.......GVRSEYHNSEGAIYLYYEN 
REMARK SW:YBD7_YEAST            759 ..EGFTRMISHKQGVLFTSSLMKVFYRITTPDAQQPYVFHISLAFINLTE 
REMARK    
REMARK SW:ADAA_MOUSE            783 KTSVQFQNFLPTVVHPGDLQTQLAVQTKRVAAQVDGGAQVQQVLNIECLR 
REMARK SW:ADAC_RAT              743 KTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVINIECIS 
REMARK PIR:S11276               744 KTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVINIECIS 
REMARK PIR:B30111               744 KTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECIS 
REMARK GP:AF006990_1            366 KTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECIS 
REMARK SW:ADAC_MOUSE            744 KTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECIS 
REMARK GP:DMALPADPT_1           746 KTQVPLTNFNPVLQWSAEDALKLNVQMKVVEPTLEAGAQIQQLLTAECIE 
REMARK GP:DMALPADAP_1           745 KTQVPLTNFNPVLQWSAEDALKLNVQMKVVEPTLEAGAQIQQLLTAECIE 
REMARK GP:CELT20B5_2            708 KTSQPFNKFTPIITCPGALAVQLQAQAKPVEPVVAAGTQVQQLINFVCVQ 
REMARK GP:AB004536_1            370 RQSNTLKSLSSTLIRT...FSTFHLATTFQDTNLPSGVQLQQKYVMSGVN 
REMARK SW:YBD7_YEAST            807 WEITGLSTQIIPSKTQGNPEYLIMNINTPSTATIGPHKRAEQSYEVSIRK 
REMARK    
REMARK SW:ADAA_MOUSE            833 DF..LTPPLLSVRFRYGGTAQSLTLK.....LPVTINKFFQPTEMAA... 
REMARK SW:ADAC_RAT              793 DF..TEAPVLNIQFRYGGTFQNVSVK.....LPITLNKFFQPTEMAS... 
REMARK PIR:S11276               794 DF..TEAPVLNIQFRYGGTFQNVSVK.....LPITLNKFFQPTEMAS... 
REMARK PIR:B30111               794 DF..TEAPVLNIQFRYGGTFQNVSVK.....LPITLNKFFQPTEMAS... 
REMARK GP:AF006990_1            416 DF..TEAPVLNIQFRYGGTFQNVSVK.....LPITLNKFFQPTEMAS... 
REMARK SW:ADAC_MOUSE            794 DF..TEAPVLNIQFRYGGTFQNVSVK.....LPITLNKFFQPTEMAS... 
REMARK GP:DMALPADPT_1           796 DY..ADAPTIEISFRYNGTQQKFSIK.....LPLSVNKFFEPTEMNA... 
REMARK GP:DMALPADAP_1           795 DY..ADAPTIEISFRYNGTQQKFSIK.....LPLSVNKFFEPTEMNA... 
REMARK GP:CELT20B5_2            758 EF..QKMPIMNIKFTFTDRAGAVQNFDKNFYLPLFISKFFEPTNMTS... 
REMARK GP:AB004536_1            417 EI..FEPPIIHVSYV.TGVIRSIDLQ.....LPVLLSKFMKPTIFDS... 
REMARK SW:YBD7_YEAST            857 PFDVEDSPILAIHFKCGGSTNTINLK.....TAIGMTTTLISSDVNPSMH 
REMARK    
REMARK SW:ADAA_MOUSE            873 ...QDFFQRWKQLSLPLQEAQK..IFKANHPMDAEVTKAKLLGFGSALL. 
REMARK SW:ADAC_RAT              833 ...QDFFQRWKQLSNPQQEVQN..IFKAKHPMDTEITKAKIIGFGSALL. 
REMARK PIR:S11276               834 ...QDFFQRWKQLSNPQQEVQN..IFKAKHPMDTEITKAKIIGFGSALL. 
REMARK PIR:B30111               834 ...QDFFQRWKQLSNPQQEVQN..IFKAKHPMDTEITKAKIIGFGSALL. 
REMARK GP:AF006990_1            456 ...QDFFQRWKQLSNPQQEVQN..IFKAKHPMDTEITKAKIIGFGSALL. 
REMARK SW:ADAC_MOUSE            834 ...QDFFQRWKQLSNPQQEVQN..IFKAKHPMDTEITKAKIIGFGSALL. 
REMARK GP:DMALPADPT_1           836 ...ESFFARWKNLSGEQQRSQK..VFKAAQPLDLPGARNKLMGFGMQLL. 
REMARK GP:DMALPADAP_1           835 ...ESFFARWKNLSGEQQRSQK..VFKAAQPLDLPGARNKLMGFGMPLL. 
REMARK GP:CELT20B5_2            803 ...EQFFTRWKSLGAASQEAQK..IFNALSPIEHATIESRLKGFGANLL. 
REMARK GP:AB004536_1            456 ...YDFFNHWGQMGVEREAQLTFGLNSKDRKLDAKRLTKIVSGFHWGIC. 
REMARK SW:YBD7_YEAST            902 LNLAQFISRWKTLSDALGKEGE..YQKSGIKLNKDFRKVETISLEDGLLL 
REMARK    
REMARK SW:ADAA_MOUSE            917 .............DNVDPNPENFVGAGIIQTKALQVGCLLRLEPNAQAQM 
REMARK SW:ADAC_RAT              877 .............EEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQM 
REMARK PIR:S11276               878 .............EEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQM 
REMARK PIR:B30111               878 .............EEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQM 
REMARK GP:AF006990_1            500 .............EEVDPNPANFVVLGIIHTKTTQIGCLLRLEPNLQAQM 
REMARK SW:ADAC_MOUSE            878 .............EEVDPNPANFVVLGIIHTKTTQIGCLLRLEPNLQAQM 
REMARK GP:DMALPADPT_1           880 .............DQVDPNPDNMVCAGIIHTQSQQVGCLMRLEPNKQAQM 
REMARK GP:DMALPADAP_1           879 .............DQVDPNPDNMVCAGIIHTQSQQVGCLMRLEPNKQAQM 
REMARK GP:CELT20B5_2            847 .............TDVDPNPDNYVCAGIIHTQTQQIGTLIRLEPNKQAKM 
REMARK GP:AB004536_1            502 .............QNVDSIALNIVGAGIIRFGTQNVGCLLRIEPNYEQNL 
REMARK SW:YBD7_YEAST            950 LTQTVKRLGFDIVDQTSVRSTLFVSGIIHTKSEGNFGCLMKIQYQVNGTV 
REMARK    
REMARK SW:ADAA_MOUSE            954 YRLTLRTSKEPVSRHLCELLAQQF 
REMARK SW:ADAC_RAT              914 YRLTLRTSKDTVSQRLCELLSEQF 
REMARK PIR:S11276               915 YRLTLRTSKDTVSQRLCELLSEQF 
REMARK PIR:B30111               915 YRLTLRTSKDTVSQRLCELLSEQF 
REMARK GP:AF006990_1            537 YRLTLRTSKDTVSQRLCELLSEQF 
REMARK SW:ADAC_MOUSE            915 YRLTLRTSKDTVSQRLCELLSEQF 
REMARK GP:DMALPADPT_1           917 FRLTVRASKETVTREICDLLTDQF 
REMARK GP:DMALPADAP_1           916 FRLTVRASKETVTREICDLLTDQF 
REMARK GP:CELT20B5_2            884 YRLTIRSSKDTVVQTLVDLLGNQF 
REMARK GP:AB004536_1            539 IRLSIRSTNTSIANTLAKEMQE.. 
REMARK SW:YBD7_YEAST           1000 NVTCKTTTAGPLAKYIVE...... 
REMARK    
REMARK    
REMARK File: t0071.fitprf 
REMARK Search results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1eriA               +   6.80   3.27  261. ! Resolution=2.70  261 residues ECO RI ENDONUCLEASE (ENDODEOXYRIBONUCLEASE ECORI) 
REMARK pdb90:1tme3               +   6.72   3.24  230. ! Resolution=2.80  230 residues THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (DA STRAI 
REMARK pdb90:1rcd                +   5.81   2.88  171. !  Resolution=2.00  171 residues MOL_ID: 1; 
REMARK pdb90:1lpfA               +   5.81   2.87  472. ! Resolution=2.80  472 residues DIHYDROLIPOAMIDE DEHYDROGENASE (E.C.1.8.1.4) COMPL 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0071.pep                 44 KTSTQFLNFTPTLICADDLQTNLNLQT.KPVDPTVDGGAQVQQVINIECI 
REMARK 1ERIA                      1 ...........................SQGVIGIFGDYAKAHDLAVGEVS 
REMARK   Consensus               51 RETTPLKTFTPTLIRPGDPEYMLHLQT.KPVDPTLPPGTQVQQMYDMDCI 
REMARK    
REMARK t0071.pep                 93 SDF...TEAPVLNIQFRYGGTFQNVSVK.......LPITLNKFFQPTEMA 
REMARK 1ERIA                     24 KLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTLFVSNSSIK 
REMARK   Consensus              101 KEFD.VFDPPILHIHFRYGGTIRTIDLKD..KDFYLPILLTKFFQPTEMD 
REMARK    
REMARK t0071.pep                133 S.......QDFFQRWKQLSNPQQEVQN...IFKAKHPMDTEITKAKIIGF 
REMARK 1ERIA                     74 PDGGIVEVKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMAA 
REMARK   Consensus              151 PSMHL.DLEEFFDRWKQLGVEREKQQKFG.LFKTDRPLDTDKMKKKLMGF 
REMARK    
REMARK t0071.pep                173 GSALL.....................EEVDPNPANFVGAGIIHTKTTQIG 
REMARK 1ERIA                    124 GNAIERSHKNISEIANFMLSESHFPY.VLFLEGSNFLTENISITRPDGRV 
REMARK   Consensus              201 GWGLLLLTQTVKRLG...F...DIV.EQVDPRPDNFVCGGIIHKGTQQIG 
REMARK    
REMARK t0071.pep                202 CLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSEQF 
REMARK 1ERIA                    173 VNLEYNSGILNRLDRLTAANYGMPINSNLCI...NKF 
REMARK   Consensus              251 CLMRLEPDFQGQMYRLCIRTTKDPIARYLCDLLQEQF 
REMARK    
MODEL 1  
PARENT 1ERIA 
K  71    Q  18 
P  72    G  19 
V  73    V  20 
D  74    I  21 
P  75    G  22 
T  76    I  23 
V  77    F  24 
D  78    G  25 
G  79    D  26 
G  80    Y  27 
A  81    A  28 
Q  82    K  29 
V  83    A  30 
Q  84    H  31 
Q  85    D  32 
V  86    L  33 
I  87    A  34 
N  88    V  35 
I  89    G  36 
E  90    E  37 
C  91    V  38 
I  92    S  39 
S  93    K  40 
D  94    L  41 
F  95    V  42 
T  96    L  46 
E  97    S  47 
A  98    N  48 
P  99    E  49 
V 100    Y  50 
L 101    P  51 
N 102    Q  52 
I 103    L  53 
Q 104    S  54 
F 105    F  55 
R 106    R  56 
Y 107    Y  57 
G 108    R  58 
G 109    D  59 
T 110    S  60 
F 111    I  61 
Q 112    K  62 
N 113    K  63 
V 114    T  64 
S 115    E  65 
V 116    I  66 
K 117    N  67 
L 118    P  75 
P 119    D  76 
I 120    L  77 
T 121    G  78 
L 122    G  79 
N 123    T  80 
K 124    L  81 
F 125    F  82 
F 126    V  83 
Q 127    S  84 
P 128    N  85 
T 129    S  86 
E 130    S  87 
M 131    I  88 
A 132    K  89 
S 133    P  90 
Q 134    K  98 
D 135    D  99 
F 136    D 100 
F 137    Y 101 
Q 138    G 102 
R 139    E 103 
W 140    W 104 
K 141    R 105 
Q 142    V 106 
L 143    V 107 
S 144    L 108 
N 145    V 109 
P 146    A 110 
Q 147    E 111 
Q 148    A 112 
E 149    K 113 
V 150    H 114 
Q 151    Q 115 
N 152    G 116 
I 153    I 120 
F 154    N 121 
K 155    I 122 
A 156    R 123 
K 157    N 124 
H 158    G 125 
P 159    L 126 
M 160    L 127 
D 161    V 128 
T 162    G 129 
E 163    K 130 
I 164    R 131 
T 165    G 132 
K 166    D 133 
A 167    Q 134 
K 168    D 135 
I 169    L 136 
I 170    M 137 
G 171    A 138 
F 172    A 139 
G 173    G 140 
S 174    N 141 
A 175    A 142 
L 176    I 143 
L 177    E 144 
E 179    V 166 
V 180    L 167 
D 181    F 168 
P 182    L 169 
N 183    E 170 
P 184    G 171 
A 185    S 172 
N 186    N 173 
F 187    F 174 
V 188    L 175 
G 189    T 176 
A 190    E 177 
G 191    N 178 
I 192    I 179 
I 193    S 180 
H 194    I 181 
T 195    T 182 
K 196    R 183 
T 197    P 184 
T 198    D 185 
Q 199    G 186 
I 200    R 187 
G 201    V 188 
C 202    V 189 
L 203    N 190 
L 204    L 191 
R 205    E 192 
L 206    Y 193 
E 207    N 194 
P 208    S 195 
N 209    G 196 
L 210    I 197 
Q 211    L 198 
A 212    N 199 
Q 213    R 200 
M 214    L 201 
Y 215    D 202 
R 216    R 203 
L 217    L 204 
T 218    T 205 
L 219    A 206 
R 220    A 207 
T 221    N 208 
S 222    Y 209 
K 223    G 210 
D 224    M 211 
T 225    P 212 
V 226    I 213 
S 227    N 214 
Q 228    S 215 
R 229    N 216 
L 230    L 217 
C 231    C 218 
E 232    I 219 
E 236    N 220 
Q 237    K 221 
F 238    F 222 
TER 
END 
