PFRMAT AL 
TARGET T0070 
AUTHOR 6140-7890-6093 
METHOD Chandonia & Cohen, unpublished. 
METHOD Aligned using combination of secondary structure based local 
METHOD potential (see Protein Society meeting abstract from 1998) 
METHOD and TOM potential from Defay & Cohen, JMB 
METHOD Average accuracy isn about 50% of residues aligned to 
METHOD within one residue of the "correct" structural alignment. 
METHOD (we used MINAREA, Falicov & Cohen) 
METHOD However, accuracy varies depending on the accuracy of 
METHOD secondary structure prediction (here, estimated at only 65.6%) 
METHOD and the actual similarity of the two structures.  At this 
METHOD time, we have no better estimate for what the actual accuracy 
METHOD will be. 
MODEL 1 
PARENT 2OMF 
Q 1 A 1 
S 2 G 8 
S 3 N 9 
V 4 K 10 
T 5 V 11 
L 6 D 12 
F 7 L 13 
G 8 Y 14 
I 9 G 15 
V 10 K 16 
D 11 A 17 
T 12 V 18 
N 13 G 19 
V 14 L 20 
A 15 H 21 
Y 16 Y 22 
V 17 F 23 
N 18 S 24 
K 19 K 25 
D 20 G 26 
A 21 N 27 
A 22 G 28 
G 23 E 29 
D 24 N 30 
S 25 S 31 
R 26 Y 32 
Y 27 G 33 
G 28 G 34 
L 29 N 35 
G 30 G 36 
T 31 D 37 
S 32 M 38 
S 35 T 39 
T 36 Y 40 
S 37 A 41 
R 38 R 42 
L 39 L 43 
G 40 G 44 
L 41 F 45 
R 42 K 46 
G 43 G 47 
T 44 E 48 
E 45 T 49 
D 46 Q 50 
L 47 I 51 
G 48 N 52 
G 49 S 53 
G 50 D 54 
L 51 L 55 
K 52 T 56 
A 53 G 57 
G 54 Y 58 
F 55 E 62 
W 56 Y 63 
L 57 N 64 
E 58 F 65 
G 59 Q 66 
E 60 G 67 
I 61 N 68 
F 62 N 69 
G 63 S 70 
D 64 E 71 
D 65 G 72 
G 66 D 74 
N 67 A 75 
A 68 Q 76 
S 69 T 77 
G 70 G 78 
F 71 N 79 
N 72 K 80 
F 73 T 81 
K 74 R 82 
R 75 L 83 
R 76 A 84 
S 77 F 85 
T 78 A 86 
V 79 G 87 
S 80 L 88 
L 81 K 89 
S 82 Y 90 
G 83 A 91 
N 84 D 92 
F 85 V 93 
G 86 G 94 
E 87 S 95 
V 88 F 96 
R 89 D 97 
L 90 Y 98 
G 91 G 99 
R 92 R 100 
D 93 N 101 
V 95 Y 102 
P 96 G 103 
T 97 V 104 
S 98 V 105 
Q 99 Y 106 
T 102 D 107 
S 103 A 108 
Y 104 L 109 
D 105 G 110 
L 106 Y 111 
F 107 T 112 
S 108 D 113 
A 109 M 114 
T 110 L 115 
G 111 P 116 
I 112 E 117 
G 113 F 118 
G 117 G 119 
N 120 G 120 
W 121 D 121 
A 122 T 122 
A 123 A 123 
G 124 Y 124 
Q 125 S 125 
G 126 D 126 
A 127 D 127 
D 128 F 128 
D 129 F 129 
N 130 V 130 
G 131 G 131 
I 132 R 132 
R 133 V 133 
A 134 G 134 
N 135 G 135 
N 136 V 136 
L 137 A 137 
I 138 T 138 
S 139 Y 139 
Y 140 R 140 
Y 141 N 141 
T 142 S 142 
N 144 N 143 
F 145 F 144 
G 146 F 145 
G 147 G 146 
F 148 L 147 
N 149 V 148 
A 150 D 149 
G 151 G 150 
F 152 L 151 
G 153 F 153 
Y 154 A 154 
A 155 V 155 
F 156 Q 156 
D 157 Y 157 
E 158 E 162 
K 159 R 163 
Q 160 D 164 
T 161 T 165 
I 162 A 166 
G 163 R 167 
T 164 R 168 
A 165 S 169 
D 166 N 170 
S 167 G 171 
V 168 D 172 
G 169 G 173 
R 170 V 174 
I 172 G 175 
G 173 G 176 
G 174 S 177 
Y 175 I 178 
V 176 S 179 
A 177 Y 180 
Y 178 E 181 
D 179 Y 182 
N 180 E 183 
G 181 G 184 
P 182 F 185 
L 183 G 186 
S 184 I 187 
A 185 V 188 
S 186 G 189 
L 187 A 190 
G 188 Y 191 
L 189 G 192 
A 190 A 193 
Q 191 A 194 
Q 192 D 195 
K 193 N 198 
T 194 L 199 
A 195 Q 200 
V 196 E 201 
G 197 A 202 
G 198 Q 203 
L 199 P 204 
A 200 L 205 
T 201 G 206 
D 202 N 207 
R 203 G 208 
D 204 K 209 
E 205 K 210 
I 206 A 211 
T 207 E 212 
L 208 Q 213 
G 209 W 214 
A 210 A 215 
S 211 T 216 
Y 212 G 217 
N 213 L 218 
K 229 K 219 
R 230 Y 220 
D 231 D 221 
I 232 A 222 
G 233 N 223 
G 234 N 224 
D 235 I 225 
I 236 Y 226 
K 237 L 227 
T 238 A 228 
N 239 A 229 
S 240 N 230 
Y 241 Y 231 
M 242 G 232 
L 243 E 233 
G 244 T 234 
A 245 N 236 
S 246 A 237 
A 247 T 238 
P 248 P 239 
V 249 I 240 
G 250 N 246 
G 251 T 247 
V 252 S 248 
G 253 G 249 
E 254 Q 255 
V 255 D 256 
K 256 V 257 
L 257 L 258 
Q 258 L 259 
Y 259 V 260 
A 260 A 261 
L 261 Q 262 
Y 262 Y 263 
D 263 Q 264 
Q 264 F 265 
K 265 D 266 
A 266 F 267 
I 267 G 268 
D 268 L 269 
S 269 R 270 
K 270 P 271 
A 271 S 272 
H 272 I 273 
Q 273 A 274 
I 274 Y 275 
T 275 T 276 
L 276 K 277 
G 277 S 278 
Y 278 K 279 
V 279 A 280 
H 280 K 281 
N 281 D 282 
L 282 V 283 
S 283 E 284 
K 284 G 285 
R 285 I 286 
T 286 G 287 
A 287 D 288 
L 288 V 289 
Y 289 D 290 
G 290 L 291 
N 291 V 292 
L 292 N 293 
A 293 Y 294 
F 294 F 295 
L 295 E 296 
K 296 V 297 
N 297 G 298 
K 298 A 299 
D 299 T 300 
A 300 Y 301 
S 301 Y 302 
T 302 F 303 
L 303 N 304 
G 304 K 305 
L 305 N 306 
Q 306 M 307 
A 307 S 308 
K 308 T 309 
G 309 Y 310 
V 310 V 311 
Y 311 D 312 
A 312 Y 313 
G 313 S 320 
G 314 D 321 
V 315 N 322 
Q 316 K 323 
A 317 L 324 
G 318 G 325 
E 319 V 326 
S 320 G 327 
Q 321 S 328 
T 322 D 329 
G 323 D 330 
V 324 T 331 
Q 325 V 332 
V 326 A 333 
G 327 V 334 
I 328 G 335 
R 329 I 336 
H 330 V 337 
A 331 Y 338 
F 332 Q 339 
TER 
END 
