PFRMAT AL 
TARGET T0068 
AUTHOR 7397-8542-2481 
METHOD A PSI-Blast showing significant similarity between target, glycosidase 
METHOD hydrolase and pecitin ligase proteins and was confirmed by 
METHOD literature searches showing that the similarity had been reported 
METHOD previously. MACAW was used to align a subset of polygalacturonase, 
METHOD glycosidase hydrolase, and pectin ligase proteins.  Adjustments of 
METHOD gaps in the alignment between target and 1rgm (a glycosidase hydrolase)  
METHOD were made based on structural observations. 
MODEL  1 
PARENT 1RMG 
A  32    T  20 
L  33    C  21 
N  34    N  22 
N  35    I  23 
C  36    L  24 
D  37    S  25 
Q  38    Y  26 
G  39    G  27 
A  41    A  28 
V  42    V  29 
R  43    A  30 
L  44    D  31 
S  45    N  32 
A  46    S  33 
G  47    T  34 
S  48    D  35 
T  49    G  37 
S  50    P  38 
V  51    A  39 
F  52    I  40 
L  53    T  41 
S  54    S  42 
G  55    A  43 
P  56    W  44 
L  57    A  45 
S  58    A  46 
L  59    C  47 
P  60    K  48 
S  61    S  49 
G  62    G  50 
V  63    G  51 
S  64    L  52 
L  65    V  53 
L  66    Y  54 
I  67    I  55 
D  68    P  56 
K  69    S  57 
G  70    N  59 
V  71    Y  60 
T  72    A  61 
L  73    L  62 
R  74    N  63 
A  75    T  64 
V  76    V  66 
N  77    T  67 
N  78    L  68 
A  79    T  69 
K  80    G  70 
S  81    G  71 
F  82    S  72 
E  83    A  73 
N  84    T  74 
A  85    A  75 
P  86    I  76 
S  87    Q  77 
S  88    L  78 
C  89    D  79 
G  90    G  80 
V  91    I  81 
V  92    I  82 
D  93    Y  83 
K  94    R  84 
N  95    T  85 
G  96    G  86 
K  97    T  87 
G  98    A  88 
C  99    S  89 
D 100    G  90 
A 101    N  91 
F 102    M  92 
I 103    I  93 
T 104    A  94 
A 105    V  95 
V 106    T  96 
S 107    D  97 
T 108    T  98 
T 109    T  99 
N 110    D 100 
S 111    F 101 
G 112    E 102 
I 113    L 103 
Y 114    F 104 
G 115    S 105 
G 117    K 109 
T 118    G 110 
I 119    A 111 
D 120    V 112 
G 121    Q 113 
Q 122    G 114 
G 123    F 115 
T 150    G 126 
P 151    A 127 
R 152    R 128 
L 153    I 129 
I 154    L 130 
Q 155    R 131 
I 156    L 132 
N 157    T 133 
K 158    D 134 
S 159    V 135 
K 160    T 136 
N 161    H 137 
F 162    F 138 
T 163    S 139 
L 164    V 140 
Y 165    H 141 
N 166    D 142 
V 167    I 143 
S 168    I 144 
L 169    L 145 
I 170    V 146 
N 171    D 147 
S 172    A 148 
P 173    P 149 
N 174    A 150 
F 175    F 151 
H 176    H 152 
V 177    F 153 
V 178    T 154 
F 179    M 155 
S 180    D 156 
D 181    T 157 
G 182    C 158 
D 183    S 159 
G 184    D 160 
F 185    G 161 
T 186    E 162 
A 187    V 163 
W 188    Y 164 
K 189    N 165 
T 190    M 166 
T 191    A 167 
I 192    I 168 
K 193    R 169 
T 194    G 170 
P 195    G 171 
A 198    E 173 
R 199    G 174 
N 200    G 175 
T 201    L 176 
D 202    D 177 
G 203    G 178 
I 204    I 179 
D 205    D 180 
P 206    V 181 
M 207    W 182 
S 208    G 183 
S 209    S 184 
N 211    N 185 
I 212    I 186 
T 213    W 187 
I 214    V 188 
A 215    H 189 
Y 216    D 190 
S 217    V 191 
N 218    E 192 
I 219    V 193 
A 220    T 194 
T 221    N 195 
G 222    K 196 
D 223    D 197 
D 224    E 198 
N 225    C 199 
V 226    V 200 
A 227    T 201 
I 228    V 202 
K 229    K 203 
E 236    P 205 
T 237    A 206 
R 238    N 207 
N 239    N 208 
I 240    I 209 
S 241    L 210 
I 242    V 211 
L 243    E 212 
H 244    S 213 
N 245    I 214 
D 246    Y 215 
F 247    C 216 
G 248    N 217 
T 249    W 218 
G 250    S 219 
H 251    G 220 
G 252    G 221 
M 253    C 222 
S 254    A 223 
I 255    M 224 
G 256    G 225 
S 257    S 226 
E 258    L 227 
T 259    G 228 
G 261    T 231 
V 262    D 232 
Y 263    V 233 
N 264    T 234 
V 265    D 235 
T 266    I 236 
V 267    V 237 
D 268    Y 238 
D 269    R 239 
L 270    N 240 
K 271    V 241 
M 272    Y 242 
N 273    T 243 
G 274    W 244 
T 275    S 245 
T 276    S 246 
N 277    N 247 
G 278    Q 248 
L 279    Y 250 
R 280    M 251 
I 281    I 252 
K 282    K 253 
S 283    S 254 
D 284    N 255 
A 287    G 257 
A 288    S 258 
G 289    G 259 
V 290    T 260 
V 291    V 261 
N 292    S 262 
G 293    N 263 
V 294    V 264 
R 295    L 265 
Y 296    L 266 
S 297    E 267 
N 298    N 268 
V 299    F 269 
V 300    I 270 
M 301    G 271 
K 302    H 272 
N 303    G 273 
V 304    N 274 
A 305    A 275 
K 306    Y 276 
P 307    S 277 
I 308    L 278 
V 309    D 279 
I 310    I 280 
D 311    D 281 
T 312    G 282 
V 313    Y 283 
K 317    A 289 
E 318    V 290 
G 319    A 291 
S 320    G 292 
N 321    D 293 
V 322    G 294 
P 323    V 295 
D 324    Q 296 
W 325    L 297 
S 326    N 298 
D 327    N 299 
I 328    I 300 
T 329    T 301 
F 330    V 302 
K 331    K 303 
D 332    N 304 
V 333    W 305 
T 334    K 306 
S 335    G 307 
E 336    T 308 
T 337    E 309 
V 340    P 317 
V 341    I 318 
V 342    R 319 
L 343    V 320 
N 344    V 321 
G 345    C 322 
E 346    S 323 
N 347    D 324 
A 348    T 325 
K 349    A 326 
K 350    P 327 
P 351    C 328 
I 352    T 329 
E 353    D 330 
V 354    L 331 
T 355    T 332 
M 356    L 333 
K 357    E 334 
N 358    D 335 
V 359    I 336 
K 360    A 337 
L 361    I 338 
T 362    W 339 
S 363    T 340 
D 364    E 341 
S 365    S 342 
T 366    G 343 
W 367    S 344 
Q 368    S 345 
I 369    E 346 
K 370    L 347 
N 371    Y 348 
V 372    L 349 
N 373    C 350 
V 374    R 351 
K 375    S 352 
K 376    A 353 
TER 
END 
