PFRMAT AL 
TARGET T0067 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK t0067.pep                  1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDE...LGKVLTPTQVK 
REMARK GP:ATU77674_1             25 ..................FTPTTKMNVSYNKKQVS....NGHELFPSSVS 
REMARK GP:LEU84140_1             24 ....................PSVKMSVVYNNNKHV...YNGHEFFPSSVT 
REMARK PIR:S68507                16 .........IGDVVD..HFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVT 
REMARK GP:F5I14_3                16 ..........GDVLD..PFNRSITLKVTYGQREVT....NGLDLRPSQVQ 
REMARK SW:OV16_ONCVO             34 DSAFKEHGIVPDV...VSTAPTKLVNVSYNNLTVN....LGNELTPTQVK 
REMARK GP:CELF40A3_3             39 AEAFTKHEVIPDVL..ASNPPSKVVSVKFNSGVEA...NLGNVLTPTQVK 
REMARK SW:OBA5_DROME             24 ENVRRIMKEMEVIPEILDEPPRELLRIKYDNTIDIE...EGKTYTPTELK 
REMARK SW:PBP_BOVIN               1 .PVDLSKWSGPLSLQEVDERPQHPLQVKYGGAEVDE...LGKVLTPTQVK 
REMARK SW:TE26_TOXCA             92 LCAGCGFISSGIVPLVVTSAPSRRVSVTFANNVQVNC...GNTLTTAQVA 
REMARK PIR:S18358                 1 .PVDLSKWSGPLSLQEVDERPQHPLQVKYGGAEVDE...LGKVLTPTQVK 
REMARK SW:PBP_MACFA               1 .PVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAALDE...LGKVLTPTQVK 
REMARK PIR:S46485                 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAALDE...LGKVLTPTQVK 
REMARK SW:PBP_RAT                 1 MAADISQWAGPLSLQEVDEPPQHALRVDYGGVTVDE...LGKVLTPTQVM 
REMARK SW:PBP_MOUSE               1 MAADISQWAGPLCLQEVDEPPQHALRVDYAGVTVDE...LGKVLTPTQVM 
REMARK SW:PBP_HUMAN               1 .PVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDE...LGKVLTPTQVK 
REMARK PIR:I53745                 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDE...LGKVLTPTQVK 
REMARK    
REMARK t0067.pep                 48 NRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYRE 
REMARK GP:ATU77674_1             53 SKP.RVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKE 
REMARK GP:LEU84140_1             51 SKP.RVEVHGGDLRSFFTLIMIDPDVPGPSDPYLRE 
REMARK PIR:S68507                55 STP.RVEVHGGDMRSFFTLIMTDPDVPGPSDPYLRE 
REMARK GP:F5I14_3                50 NKP.RVEIGGEDLRNFYTLVMVDPDVPSPSNPHLRE 
REMARK SW:OV16_ONCVO             77 NQPTKVSWDA.EPGALYTLVMTDPDAPSRKNPVFRE 
REMARK GP:CELF40A3_3             84 DTP.EVKWDA.EPGALYTLIKTDPDAPSRKEPTYRE 
REMARK SW:OBA5_DROME             71 FQP.RLDWNA.DPESFYTVLMICPDAPNRENPMYRS 
REMARK SW:PBP_BOVIN              47 NRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYRE 
REMARK SW:TE26_TOXCA            139 NQP.TVTWEA.QPNDRYTLIMVDPDFPSAANGQQGQ 
REMARK PIR:S18358                47 NRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYRE 
REMARK SW:PBP_MACFA              47 NRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYRE 
REMARK PIR:S46485                48 NRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYRE 
REMARK SW:PBP_RAT                48 NRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFRE 
REMARK SW:PBP_MOUSE              48 NRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFRE 
REMARK SW:PBP_HUMAN              47 NRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYRE 
REMARK PIR:I53745                48 NRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYRE 
REMARK    
REMARK t0067.pep                 84 WHHFLVVNMK.GNDISSGTVLSDYVGSGPPKG 
REMARK GP:ATU77674_1             88 HLHWIVTNIPGTTDATFGKEVVSY..ELPRPS 
REMARK GP:LEU84140_1             86 HLHWIVTDIPGTTDCSFGREVVGY..EMPRPN 
REMARK PIR:S68507                90 HLHWIVTDIPGTTDSSFGKEVVSY..EMPRPN 
REMARK GP:F5I14_3                85 YLHWLVTDIPATTGTTFGNEIVCY..ENPSPT 
REMARK SW:OV16_ONCVO            112 WHHWLIINIS.GQNVSSGTVLSDYIGSGPRKG 
REMARK GP:CELF40A3_3            118 WHHWLVVNIP.GNDIAKGDTLSEYIGAGPPPK 
REMARK SW:OBA5_DROME            105 RLHWLVVNVP.GLDIMKGQPISEYFGPLPPKD 
REMARK SW:PBP_BOVIN              83 WHHFLVVNMK.GNNISSGTVLSDYVGSGPPKG 
REMARK SW:TE26_TOXCA            173 RLHWWVINIP.GNNIAGGTTLAAFQPSTPAAN 
REMARK PIR:S18358                83 WHHFLVVNMK.GNNISSGTVLSDYVGSGPPKG 
REMARK SW:PBP_MACFA              83 WHHFLVVNMK.GNDISSGTVLSDYVGSGPPKG 
REMARK PIR:S46485                84 WHHFLVVNMK.GNDISSGTVLSDYVGSGPPKG 
REMARK SW:PBP_RAT                84 WHHFLVVNMK.GNDISSGTVLSEYVGSGPPKD 
REMARK SW:PBP_MOUSE              84 WHHFLVVNMK.GNDISSGTVLSDYVGSGPPSG 
REMARK SW:PBP_HUMAN              83 WHHFLVVNMK.GNDISSGTVLSDYVGSGPPKG 
REMARK PIR:I53745                84 WHHFLVVNMK.GNDISSGTVLSDYVGSGPPKG 
REMARK    
REMARK t0067.pep                115 TGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELR 
REMARK GP:ATU77674_1            118 IGIHRFVFVLFRQ......KQRRVIFPNIPSRDHFNTRKFAVEYDLG 
REMARK GP:LEU84140_1            116 IGIHRFVFLLFKQ......KKRQTISSAPVSRDQFSSRKFSEENELG 
REMARK PIR:S68507               120 IGIHRFVFLLFKQ....KKRGQAMLSPPVVCRDGFNTRKFTQENELG 
REMARK GP:F5I14_3               115 AGIHRVVFILFRQLG.......RQTVYAPGWRQNFNTREFAEIYNLG 
REMARK SW:OV16_ONCVO            143 TGLHRYVFLVYKQPGSITDT......QHGGNRRNFKVMDFANKHHLG 
REMARK GP:CELF40A3_3            149 TGLHRYVYLIYKQSGRIEDAEHRLTNTSGDKRGGWKAADFVAKHKLG 
REMARK SW:OBA5_DROME            136 SGIQRYLILVYQQSDKLDFDEKKMELSNADGHSNFDVMKFTQKYEMG 
REMARK SW:PBP_BOVIN             114 TGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELG 
REMARK SW:TE26_TOXCA            204 TGVHRYVFLVYRQPAAINSPLLNNLVVQDSERPGFGTTAFATQFNLG 
REMARK PIR:S18358               114 TGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELG 
REMARK SW:PBP_MACFA             114 TGLHRYVWLVYEQARPLKCDEPILSNRSGDHRGKFKVASFRKKYELG 
REMARK PIR:S46485               115 TGLHRYVWLVYEQARPLKCDEPILSNRSGDHRGKFKVASFRKKYELG 
REMARK SW:PBP_RAT               115 TGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKKYHLG 
REMARK SW:PBP_MOUSE             115 TSLHRYVWLVYEQEQPLSCDEPILSNKSGDNRGKFKVETFRKKYNLG 
REMARK SW:PBP_HUMAN             114 TGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELR 
REMARK PIR:I53745               115 TGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELR 
REMARK    
REMARK t0067.pep                162 APVAGTCYQAEWDDYVPKLYEQLSGK 
REMARK GP:ATU77674_1            159 LPVAAVFFNAQRETAARK........ 
REMARK GP:LEU84140_1            157 SPVAAVFFNCQRETAARR........ 
REMARK PIR:S68507               163 LPVAAVFFNCQRETAARR........ 
REMARK GP:F5I14_3               155 LPVAAVFYNCQRESGCGGRRL..... 
REMARK SW:OV16_ONCVO            184 NPVAGNFFQAKHED............ 
REMARK GP:CELF40A3_3            197 APVFGNLFQAEYDDYVPILNKQLGA. 
REMARK SW:OBA5_DROME            183 SPVAGNIFQSRWDEYVPELMKTLYG. 
REMARK SW:PBP_BOVIN             161 APVAGTCYQAEWDDYVPKLYEQLSGK 
REMARK SW:TE26_TOXCA            251 SPYAGNFYRSQ............... 
REMARK PIR:S18358               161 APVAGTCYQAEWDDYDPKLYEQLSGK 
REMARK SW:PBP_MACFA             161 APVAGACYQAEWDDYVPKLYEQLSGK 
REMARK PIR:S46485               162 APVAGACYQAEWDDYVPKLYEQLSGK 
REMARK SW:PBP_RAT               162 APVAGTCFQAEWDDSVPKLHDQLAGK 
REMARK SW:PBP_MOUSE             162 APVAGTCYQAEWDDYVPKLYEQLSGK 
REMARK SW:PBP_HUMAN             161 APVAGTCYQAEWDDYVPKLYEQLSGK 
REMARK PIR:I53745               162 APVAGTCYQAEWDDYVPKLYEQLSGK 
REMARK    
REMARK    
REMARK Search results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1sup                +   4.81   5.30  275. !  Resolution=1.60  275 residues MOL_ID: 1; 
REMARK pdb90:1ffh                +   4.42   5.09  287. !  Resolution=2.05  287 residues MOL_ID: 1; 
REMARK pdb90:1meeA               +   4.08   4.90  275. ! Resolution=2.00  275 residues MESENTERICOPEPTIDASE (E.C.3.4.21.14) PEPTIDYL PEPT 
REMARK pdb90:1hf1                +   3.73   4.71  234. !  Resolution=0.00  234 residues HANNUKA FACTOR (THEORETICAL MODEL) 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0067.pep                  1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDE..L.GKVLTPTQVK 
REMARK 1SUP                     155 NEGTSG..SSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPG 
REMARK    
REMARK t0067.pep                 48 NRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMK.GND 
REMARK 1SUP                     203 VSIQS.TLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLE 
REMARK    
REMARK t0067.pep                 97 ISSGTVLSDYV.....GSGPPKG 
REMARK 1SUP                     252 NTTTKLGDSFYYGKGLINVQAAA 
REMARK    
MODEL 1  
PARENT 1SUP 
M   1    N 155     
P   2    E 156     
V   3    G 157     
D   4    T 158     
L   5    S 159     
S   6    G 160     
S   9    S 161     
G  10    S 162     
P  11    S 163     
L  12    T 164     
S  13    V 165     
L  14    G 166     
Q  15    Y 167     
E  16    P 168     
V  17    G 169     
D  18    K 170     
E  19    Y 171     
Q  20    P 172     
P  21    S 173     
Q  22    V 174     
H  23    I 175     
P  24    A 176     
L  25    V 177     
H  26    G 178     
V  27    A 179     
T  28    V 180     
Y  29    D 181     
A  30    S 182     
G  31    S 183     
A  32    N 184     
A  33    Q 185     
V  34    R 186     
D  35    A 187     
E  36    S 188     
L  37    S 191     
G  38    G 193     
K  39    P 194     
V  40    E 195     
L  41    L 196     
T  42    D 197     
P  43    V 198     
T  44    M 199     
Q  45    A 200     
V  46    P 201     
K  47    G 202     
N  48    V 203     
R  49    S 204     
P  50    I 205     
T  51    Q 206     
S  52    S 207     
S  54    T 208     
W  55    L 209     
D  56    P 210     
G  57    G 211     
L  58    N 212     
D  59    K 213     
S  60    Y 214     
G  61    G 215     
K  62    A 216     
L  63    Y 217     
Y  64    N 218     
T  65    G 219     
L  66    T 220     
V  67    S 221     
L  68    M 222     
T  69    A 223     
D  70    S 224     
P  71    P 225     
D  72    H 226     
A  73    V 227     
P  74    A 228     
S  75    G 229     
R  76    A 230     
K  77    A 231     
D  78    A 232     
P  79    L 233     
K  80    I 234     
Y  81    L 235     
R  82    S 236     
E  83    K 237     
W  84    H 238     
H  85    P 239     
H  86    N 240     
F  87    W 241     
L  88    T 242     
V  89    N 243     
V  90    T 244     
N  91    Q 245     
M  92    V 246     
K  93    R 247     
G  94    S 249     
N  95    L 250     
D  96    E 251     
I  97    N 252     
S  98    T 253     
S  99    T 254     
G 100    T 255     
T 101    K 256     
V 102    L 257     
L 103    G 258     
S 104    D 259     
D 105    S 260     
Y 106    F 261     
V 107    Y 262     
G 108    I 268     
S 109    N 269     
G 110    V 270     
P 111    Q 271     
P 112    A 272     
K 113    A 273     
G 114    A 274     
TER 
END 
