PFRMAT AL 
TARGET T0067 
AUTHOR 3707-4066-9021 
REMARK FORESST ordered by Z scores, length ratios and J scores using 
REMARK SIMPA with homologues as secondary structure predictions. 
METHOD FORESST is a fold recognition method based on secondary structure 
METHOD predictions and hidden Markov models of observed secondary structures. 
METHOD Di Francesco V, Garnier J and Munson PJ., 1997, Protein Topology  
METHOD recognition METHOD from secondary structure sequences: application  
METHOD of the hidden Markov model to the alpha class proteins.  
METHOD J. Mol. Biol.267:446-463. 
MODEL  1 
PARENT 1hneE 
M   1    I  16 
P   2    V  17 
V   3    G  18 
D   4    G  19 
L   5    R  20 
S   6    R  21 
K   7    A  22 
W   8    R  23 
S   9    P  24 
G  10    H  25 
P  11    A  26 
L  12    W  27 
S  13    P  28 
L  14    F  29 
Q  15    M  30 
E  16    S  32 
V  17    L  33 
D  18    Q  34 
E  19    L  35 
Q  20    R  36 
P  21    G  38 
Q  22    G  39 
H  23    H  40 
P  24    F  41 
L  25    C  42 
H  26    G  43 
V  27    A  44 
T  28    T  45 
Y  29    L  46 
A  30    I  47 
G  31    A  48 
A  32    P  49 
A  33    N  50 
V  34    F  51 
D  35    V  52 
E  36    M  53 
L  37    S  54 
G  38    A  55 
K  39    A  56 
V  40    H  57 
L  41    C  58 
T  42    V  59 
P  43    A  60 
T  44    N  61 
Q  45    V  62 
V  46    N  62A 
K  47    V  62B 
N  48    R  63 
R  49    A  64 
P  50    V  65 
T  51    R  65A 
S  52    V  66 
I  53    V  67 
S  54    L  68 
W  55    G  69 
D  56    A  70 
G  57    H  71 
L  58    N  72 
D  59    L  73 
S  60    S  74 
G  61    R  75 
K  62    R  76 
L  63    V  85 
Y  64    Q  86 
T  65    R  87 
L  66    I  88 
V  67    F  89 
L  68    E  90 
T  69    D  91 
D  70    G  92 
P  71    Y  94 
D  72    D  95 
A  73    P  98 
P  74    V  99 
S  75    N  99A 
R  76    L  99B 
K  77    L  100 
D  78    N  101 
P  79    D  102 
K  80    I  103 
F  87    V  104 
L  88    I  105 
V  89    L  106 
V  90    Q  107 
N  91    L  108 
M  92    N  109 
K  93    G  110 
G  94    S  111 
N  95    A  112 
D  96    T  113 
I  97    I  114 
S  98    N  115 
S  99    A  116 
G 100    N  117 
T 101    V  118 
V 102    Q  119 
L 103    V  120 
S 104    A  121 
D 105    Q  122 
Y 106    L  123 
V 107    P  124 
G 108    A  125 
S 109    Q  126 
G 110    G  127 
P 111    R  128 
P 112    R  129 
K 113    L  130 
G 114    G  131 
T 115    N  132 
G 116    G  133 
L 117    V  134 
H 118    Q  135 
R 119    C  136 
Y 120    L  137 
V 121    A  138 
W 122    M  139 
L 123    G  140 
V 124    W  141 
Y 125    G  142 
E 126    L  143 
Q 127    L  144 
D 128    G  145 
R 129    R  147 
P 130    N  148 
L 131    R  149 
K 132    G  150 
C 133    I  151 
D 134    A  152 
E 135    S  153 
P 136    V  154 
I 137    L  155 
L 138    Q  156 
S 139    E  157 
G 143    L  167 
D 144    C  168 
H 145    R  177 
R 146    R  178 
G 147    S  179 
K 148    N  180 
F 149    V  181 
K 150    C  182 
V 151    T  183 
A 152    L  184 
S 153    V  185 
F 154    R  186 
R 155    G  186A 
K 156    R  187 
K 157    Q  188 
Y 158    A  188A 
E 159    G  189 
L 160    V  190 
R 161    C  191 
A 162    F  192 
P 163    G  193 
V 164    D  194 
A 165    S  195 
G 166    G  196 
T 167    S  197 
C 168    P  198 
Y 169    L  199 
Q 170    V  200 
A 171    C  201 
E 172    N  204 
W 173    G  205 
D 174    L  208 
D 175    V  231 
Y 176    A  232 
V 177    Q  233 
P 178    F  234 
K 179    V  235 
L 180    N  236 
Y 181    W  237 
E 182    I  238 
Q 183    D  239 
L 184    S  240 
S 185    I  241 
G 186    I  242 
K 187    Q  243 
TER 
END 
