PFRMAT AL 
TARGET T0067 
AUTHOR 7397-8542-2481 
METHOD The secondary structure prediction downloaded from the JPRED server  
METHOD suggested an all beta fold with a helical decoration at the C-termus. 
METHOD The number of predicted beta strands, the location of the helix, the 
METHOD size of the protein, its binding of a hydrophobic substrate, and the  
METHOD fact that it is exported all suggested a lipocalin-like structure. 
METHOD An alignment of PBPs derived from a PSI-BLAST search was matched to  
METHOD a STAMP alignment of lipocalin structures.  1bbp was thereby chosen 
METHOD as the template. 
MODEL  1 
PARENT 1bbp_A 
G  10    D   16 
P  11    N   17 
L  12    F   18 
S  13    D   19 
L  14    W   20 
Q  15    S   21 
E  16    N   22 
E  19    Y   23 
Q  20    H   24 
P  21    G   25 
Q  22    K   26 
H  23    W   27 
P  24    W   28 
L  25    E   29 
H  26    V   30 
V  27    A   31 
T  28    K   32 
A  33    E   47 
V  34    Y   48 
D  35    T   49 
E  36    P   50 
L  37    E   51 
G  38    G   52 
K  39    K   53 
V  40    S   54 
L  41    V   55 
T  42    K   56 
P  43    V   57 
T  44    S   58 
Q  45    N   59 
V  46    Y   60 
K  47    H   61 
T  51    F   69 
S  52    I   70 
I  53    E   71 
S  54    G   72 
W  55    T   73 
D  56    A   74 
G  57    Y   75 
L  63    I   88 
Y  64    Y   89 
T  65    H   90 
L  66    K   91 
V  67    L   92 
L  68    T   93 
T  69    Y   94 
Y  81    V   97 
R  82    T   98 
E  83    K   99 
W  84    E  100 
H  85    N  101 
H  86    V  102 
F  87    F  103 
L  88    N  104 
V  89    V  105 
V  90    L  106 
N  91    S  107 
M  92    T  108 
K  93    D  109 
G  94    N  110 
N  95    K  111 
D  96    N  112 
I  97    Y  113 
S  98    I  114 
S  99    I  115 
G 100    G  116 
T 101    Y  117 
V 102    Y  118 
L 103    C  119 
S 104    K  120 
D 105    Y  121 
Y 106    D  122 
G 116    G  127 
L 117    H  128 
H 118    Q  129 
R 119    D  130 
Y 120    F  131 
V 121    V  132 
W 122    W  133 
L 123    V  134 
V 124    L  135 
Y 125    S  136 
K 148    G  143 
F 149    E  144 
K 150    A  145 
V 151    K  146 
A 152    T  147 
S 153    A  148 
F 154    V  149 
R 155    E  150 
K 156    N  151 
K 157    Y  152 
Y 158    L  153 
E 159    I  154 
TER 
END 
