PFRMAT AL 
TARGET t0067 
AUTHOR 4139-4764-1095 
METHOD 1) Secondary structure was predicted with PHD and Predator. 
METHOD 2) We used a hidden markov model that predicts SCOP 
METHOD    classification based on sequence and secondary structure. 
METHOD 3) Threading was done with THREADER2, taking predicted 
METHOD    secondary structure into account. 
METHOD 4) We got a significant hit to flavodixin. To further check 
METHOD    this, we did alignments to a family or similar  
METHOD    structures, with "acceptable" result. The alignment below 
METHOD    is essentially the one from threader. 
MODEL 1 
PARENT 2fx2 
P  21	A   2 
Q  22	K   3 
H  23	A   4 
P  24	L   5 
L  25	I   6 
H  26	V   7 
V  27	Y   8 
T  28	G   9 
Y  29	S  10 
A  30	T  15 
G  31	E  16 
A  32	Y  17 
A  33	T  18 
V  34	A  19 
D  35	E  20 
E  36	T  21 
L  37	I  22 
G  38	A  23 
K  39	R  24 
V  40	E  25 
L  41	L  26 
T  42	A  27 
P  43	D  28 
T  44	A  29 
S  60	G  30 
G  61	Y  31 
K  62	E  32 
L  63	V  33 
Y  64	D  34 
T  65	S  35 
L  66	R  36 
V  67	D  37 
L  68	A  38 
T  69	A  39 
D  70	S  40 
P  71	V  41 
D  72	E  42 
A  73	A  43 
P  74	G  44 
S  75	G  45 
R  76	L  46 
K  77	F  47 
D  78	E  48 
P  79	G  49 
E  83	F  50 
W  84	D  51 
H  85	L  52 
H  86	V  53 
F  87	L  54 
L  88	L  55 
V  89	G  56 
V  90	C  57 
N  91	S  58 
M  92	T  59 
K  93	W  60 
G  94	G  61 
N  95	D  62 
D  96	D  63 
G 100	S  64 
T 101	I  65 
V 102	E  66 
L 103	L  67 
S 104	Q  68 
D 105	D  69 
Y 106	D  70 
V 107	F  71 
G 108	I  72 
S 109	P  73 
G 110	L  74 
P 111	F  75 
P 112	D  76 
K 113	S  77 
G 114	L  78 
T 115	E  79 
G 116	E  80 
L 117	T  81 
H 118	G  82 
R 119	K  87 
Y 120	V  88 
V 121	A  89 
W 122	C  90 
L 123	F  91 
V 124	G  92 
Y 125	C  93 
E 126	G  94 
Q 127	D  95 
D 128	E  99 
R 129	Y 100 
P 130	F 101 
L 131	C 102 
K 132	G 103 
C 133	A 104 
D 134	V 105 
E 135	D 106 
P 136	A 107 
I 137	I 108 
L 138	E 109 
S 139	E 110 
N 140	K 111 
R 141	L 112 
S 142	K 113 
G 143	N 114 
D 144	L 115 
H 145	G 116 
F 149	A 117 
K 150	E 118 
V 151	I 119 
A 152	V 120 
R 161	Q 121 
A 162	D 122 
P 163	G 123 
V 164	L 124 
A 165	R 125 
G 166	I 126 
T 167	D 127 
C 168	G 128 
Y 169	D 129 
Q 170	P 130 
A 171	R 131 
E 172	A 132 
W 173	A 133 
D 174	R 134 
D 175	D 135 
Y 176	D 136 
V 177	I 137 
P 178	V 138 
K 179	G 139 
L 180	W 140 
Y 181	A 141 
E 182	H 142 
Q 183	D 143 
L 184	V 144 
S 185	R 145 
G 186	G 146 
K 187	A 147 
TER 
END 
