 
PFRMAT AL 
TARGET T0064 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: 2cro BS_30_25% 
REMARK Matrix Used: 1al8 BS_90_10%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 2cro 
M    A1 T    1 
I    A2 L    2 
G    A3 S    3 
Q    A4 E    4 
R    A5 R    5 
I    A6 L    6 
K    A7 K    7 
Q    A8 K    8 
Y    A9 R    9 
R   A10 R   10 
K   A11 I   11 
E   A12 A   12 
K   A13 L   13 
G   A14 K   14 
Y   A15 M   15 
S   A16 T   16 
L   A17 Q   17 
S   A18 T   18 
E   A19 E   19 
L   A20 L   20 
A   A21 A   21 
E   A22 T   22 
K   A23 K   23 
A   A24 A   24 
G   A25 G   25 
V   A26 V   26 
A   A27 K   27 
K   A28 Q   28 
S   A29 Q   29 
Y   A30 S   30 
L   A31 I   31 
R   A36 Q   32 
N   A37 L   33 
L   A38 I   34 
Q   A39 E   35 
T   A40 V   38 
N   A41 T   39 
P   A42 K   40 
S   A43 R   41 
I   A44 P   42 
Q   A45 R   43 
F   A46 F   44 
L   A47 L   45 
E   A48 F   46 
K   A49 E   47 
V   A50 I   48 
S   A51 A   49 
A   A52 M   50 
V   A53 A   51 
L   A54 L   52 
D   A55 N   53 
V   A56 C   54 
S   A57 D   55 
V   A58 P   56 
H   A59 V   57 
T   A60 W   58 
L   A61 L   59 
L   A62 Q   60 
D   A63 Y   61 
TER 
END 
