PFRMAT AL 
TARGET T0064 
AUTHOR 2234-4819-7150 
REMARK Only segments of query sequence that aligned with PDB sequence are given (N-terminal 65 aa) 
METHOD Identification of PDB sequences related by evolution to the target 
METHOD (query) sequence was performed by PSI-BLAST run locally.  The first search is performed  
METHOD with the CASP3 sequence against the non-redundant protein database ("nr").  Four runs of PSI-BLAST were 
METHOD run with an E-value cutoff of 0.001.  The final matrix (checkpoint file) was 
METHOD used to search the PDB.   
METHOD This search results in the following homologous chains: 
METHOD gi|2392519|pdb|1R63|  Structural Role Of A Buried Salt Bridge I...    69  1e-13 
METHOD gi|230281|pdb|1R69|  434 Repressor (Amino-Terminal Domain) (R1-...    69  1e-13 
METHOD gi|1421288|pdb|1PRA|  Repressor Protein From Bacteriophage 434 ...    69  1e-13 
METHOD gi|493805|pdb|1ADR|  P22 C2 Repressor (Amino-Terminal Dna-Bindi...    67  4e-13 
METHOD gi|2392715|pdb|2R63|  Structural Role Of A Buried Salt Bridge I...    66  8e-13 
METHOD gi|230465|pdb|2CRO|  434 Cro Protein >gi|230833|pdb|3CRO|L Bact...    64  3e-12 
METHOD gi|640244|pdb|1LLI|A bacteriophage lambda >gi|640245|pdb|1LLI|B...    41  3e-05 
METHOD gi|230136|pdb|1LRP|  Lambda Repressor (N-Terminal Domain) >gi|4...    39  1e-04 
METHOD gi|2094890|pdb|1UXC|  Fructose Repressor Dna-Binding Domain, Nm...    28  0.25 
METHOD gi|1431648|pdb|2TCT|  Mol_id: 1; Molecule: Tetracycline Repress...    26  0.97 
METHOD gi|1633297|pdb|2TRT|  Tetracycline Repressor Class D Transcript...    26  0.97 
METHOD 
MODEL  1 
PARENT 1r69 
M  A1    S   1 
I  A2    I   2 
G  A3    S   3 
Q  A4    S   4 
R  A5    R   5 
I  A6    V   6 
K  A7    K   7 
Q  A8    S   8 
Y  A9    K   9 
R A10    R  10 
K A11    I  11 
E A12    Q  12 
K A13    L  13 
G A14    G  14 
Y A15    L  15 
S A16    N  16 
L A17    Q  17 
S A18    A  18 
E A19    E  19 
L A20    L  20 
A A21    A  21 
E A22    Q  22 
K A23    K  23 
A A24    V  24 
G A25    G  25 
V A26    T  26 
A A27    T  27 
K A28    Q  28 
S A29    Q  29 
Y A30    S  30 
L A31    I  31 
S A32    E  32 
S A33    Q  33 
I A34    L  34 
E A35    E  35 
R A36    N  36 
N A37    G  37 
L A38    K  38 
Q A39    T  39 
T A40    K  40 
N A41    R  41 
P A42    P  42 
Q A45    R  43 
F A46    F  44 
L A47    L  45 
E A48    P  46 
K A49    E  47 
V A50    L  48 
S A51    A  49 
A A52    S  50 
V A53    A  51 
L A54    L  52 
D A55    G  53 
V A56    V  54 
S A57    S  55 
V A58    V  56 
H A59    D  57 
T A60    W  58 
L A61    L  59 
L A62    L  60 
D A63    N  61 
E A64    G  62 
K A65    T  63 
TER 
END 
