PFRMAT     AL 
TARGET     T0064 
AUTHOR     7545-6133-3082 
REMARK 
METHOD   blastp was used to find homologous sequences of which a multiple 
METHOD   sequences alignment was build and used as seed for HMMer. The 
METHOD   resulting hmm was used to search against a version of pdb which 
METHOD   only contains proteins of less than 90% homology. Three significant 
METHOD   hits were found, two of which had the same fold (as had some of the 
METHOD   hits which were just not-significant). Thus the highest hit with 
METHOD   a differet fold was ignored and the second-highest hit was used as 
METHOD   parent. This however covers only the first half of the sequence. 
METHOD   No fold could be found for the remaining around thirty residues. 
METHOD   A specifically developed neural network gave high scores only 
METHOD   for three of the alignments, two of which had a common fold (which 
METHOD   is the same as the one obtained from sequence similarity). It did 
METHOD   however give a higher score to a different version of that fold, so 
METHOD   that pdb-entry is used as a parent here. 
MODEL 2 
PARENT 1lli_A 
I       A2       L       18 
G       A3       K       19 
Q       A4       A       20 
R       A5       I       21 
I       A6       Y       22 
K       A7       E       23 
Q       A8       K       24 
Y       A9       K       25 
R       A10      K       26 
K       A11      N       27 
E       A12      E       28 
K       A13      L       29 
G       A14      G       30 
Y       A15      L       31 
S       A16      S       32 
L       A17      Q       33 
S       A18      E       34 
E       A19      S       35 
L       A20      L       36 
A       A21      A       37 
E       A22      D       38 
K       A23      K       39 
A       A24      L       40 
G       A25      G       41 
V       A26      M       42 
A       A27      G       43 
K       A28      Q       44 
S       A29      S       45 
Y       A30      G       46 
L       A31      I       47 
S       A32      G       48 
S       A33      A       49 
I       A34      L       50 
E       A35      F       51 
R       A36      N       52 
N       A37      G       53 
Q       A39      I       54 
T       A40      N       55 
N       A41      A       56 
P       A42      L       57 
S       A43      N       58 
I       A44      A       59 
Q       A45      Y       60 
F       A46      N       61 
L       A47      A       62 
E       A48      A       63 
K       A49      L       64 
V       A50      L       65 
S       A51      A       66 
A       A52      K       67 
V       A53      I       68 
L       A54      L       69 
D       A55      K       70 
V       A56      V       71 
S       A57      S       72 
V       A58      V       73 
H       A59      E       74 
T       A60      E       75 
L       A61      F       76 
L       A62      S       77 
D       A63      P       78 
K       A65      S       79 
H       A66      I       80 
E       A67      A       81 
T       A68      R       82 
E       A69      E       83 
Y       A70      I       84 
D       A71      Y       85 
G       A72      E       86 
Q       A73      M       87 
L       A74      Y       88 
D       A75      E       89 
S       A76      A       90 
TER 
END 
