PFRMAT AL 
TARGET T0063 
AUTHOR 9808-8259-1323 
METHOD Searched pdb sequences with max. 90% identity using a profile made 
METHOD from target sequence and PAM250. Alignments were set to length of 
METHOD profile. 
REMARK Results: 
REMARK  PROFILESEARCH $Revision: 4.12 $ $Date: 1996/10/11 
REMARK  Profile : t63.seqprf 
REMARK  Length  : 138 
REMARK  Database file   1 : /home/rluethy/test/casp3/pdb90.seq 
REMARK  Gap opening penalty   :   1.70 
REMARK  Gap extension penalty :   0.20 
REMARK  alignment method = FIT_PRF   (P) 
REMARK  Sequences searched :       1961 
REMARK  Normalization without length correction. 
REMARK          Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1pjr                +   7.02   6.50  623. !  Resolution=2.50  623 residues MOL_ID: 1; 
REMARK pdb90:1que                +   6.73   6.28  303. !  Resolution=1.80  303 residues MOL_ID: 1; 
REMARK pdb90:1gd1O               +   4.30   4.42  334. ! Resolution=1.80  334 residues $HOLO-*D-*GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 
REMARK                           .         .         .         .         . 
REMARK              467 QLEQWTQLQEYVSVTELVEE...VLDKSGYR....EMLKAERTIEAQSRL 
REMARK                   :  |     ||   || |    |:|    |    |  |. :   . .|: 
REMARK                1 MVLKWVMSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARI 
REMARK                           .         .         .         .         . 
REMARK              510 ENLDEFLSVTKHFENVSDDKSLIAFLTDLALISXXXXXXXXXXXXXGDAV 
REMARK                    :  | .  : .  :  |        ::.:|              || | 
REMARK               51 VAVGVFDGGKRTL.SLPVDAQ.....VEVPIIEKFT...AQILSVSGDVI 
REMARK                           .         .         .         . 
REMARK              560 MLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYV 
REMARK                   || |.  | :| |. |:     | ..    :|  . |:  : :    
REMARK               92 QLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKIIRVK 
REMARK 
MODEL  1 
PARENT 1pjr 
M   1    Q 467 
V   2    L 468 
L   3    E 469 
K   4    Q 470 
W   5    W 471 
V   6    T 472 
M   7    Q 473 
S   8    L 474 
T   9    Q 475 
K  10    E 476 
Y  11    Y 477 
V  12    V 478 
E  13    S 479 
A  14    V 480 
G  15    T 481 
E  16    E 482 
L  17    L 483 
K  18    V 484 
E  19    E 485 
G  20    E 486 
V  24    V 487 
I  25    L 488 
D  26    D 489 
G  27    K 490 
E  28    S 491 
P  29    G 492 
C  30    Y 493 
R  31    R 494 
E  36    E 495 
K  37    M 496 
S  38    L 497 
K  39    K 498 
T  40    A 499 
G  41    E 500 
K  42    R 501 
H  43    T 502 
G  44    I 503 
S  45    E 504 
A  46    A 505 
K  47    Q 506 
A  48    S 507 
R  49    R 508 
I  50    L 509 
V  51    E 510 
A  52    N 511 
V  53    L 512 
G  54    D 513 
V  55    E 514 
F  56    F 515 
D  57    L 516 
G  58    S 517 
G  59    V 518 
K  60    T 519 
R  61    K 520 
T  62    H 521 
L  63    F 522 
S  64    N 524 
L  65    V 525 
P  66    S 526 
V  67    D 527 
D  68    D 528 
A  69    K 529 
Q  70    S 530 
V  71    T 536 
E  72    D 537 
V  73    L 538 
P  74    A 539 
I  75    L 540 
I  76    I 541 
E  77    S 542 
G  88    G 556 
D  89    D 557 
V  90    A 558 
I  91    V 559 
Q  92    M 560 
L  93    L 561 
M  94    M 562 
D  95    T 563 
M  96    L 564 
R  97    H 565 
D  98    A 566 
Y  99    A 567 
K 100    K 568 
T 101    G 569 
I 102    L 570 
E 103    E 571 
V 104    F 572 
P 105    P 573 
M 106    V 574 
K 107    V 575 
Y 108    F 576 
V 109    L 577 
E 110    I 578 
E 111    G 579 
E 112    M 580 
A 113    E 581 
K 114    E 582 
G 115    G 583 
R 116    I 584 
L 117    F 585 
A 118    P 586 
P 119    H 587 
G 120    N 588 
A 121    R 589 
E 122    S 590 
V 123    L 591 
E 124    E 592 
V 125    D 593 
W 126    D 594 
Q 127    D 595 
I 128    E 596 
L 129    M 597 
D 130    E 598 
R 131    E 599 
Y 132    E 600 
K 133    R 601 
I 134    R 602 
I 135    L 603 
R 136    A 604 
V 137    Y 605 
K 138    V 606 
TER 
END 
