PFRMAT AL 
TARGET T0061 
AUTHOR 4139-4764-1095 
METHOD 1) Secondary structure was predicted with Predator. 
METHOD 2) We used a hidden Markov model that predicts SCOP 
METHOD    classification based on sequence and secondary structure. 
METHOD    Among the highest scoring models the one producing 
METHOD    the best alignment was chosen. 
METHOD 3) The sequence most representative for the model was 
METHOD    used for the alignment. 
MODEL 1 
PARENT 1cc5 
A   1   G   5 
D   2   G   6 
A   3   G   7 
Q   4   A   8 
K   5   R   9 
A   6   S  10 
A   7   G  11 
D   8   D  12 
N   9   D  13 
K  10   V  14 
K  11   V  15 
P  12   A  16 
V  13   K  17 
N  14   Y  18 
S  15   C  19 
W  16   N  20 
T  17   A  21 
C  18   C  22 
E  19   H  23 
D  20   G  24 
F  21   T  25 
L  22   G  26 
A  23   L  27 
V  24   L  28 
D  25   N  29 
E  26   A  30 
S  27   P  31 
F  28   K  32 
Q  29   V  33 
P  30   G  34 
T  31   D  35 
A  32   S  36 
V  33   A  37 
G  34   A  38 
F  35   W  39 
A  36   K  40 
E  37   T  41 
A  38   R  42 
L  39   A  43 
N  40   D  44 
N  41   A  45 
K  42   G  47 
D  43   G  48 
K  44   L  49 
P  45   D  50 
E  46   G  51 
D  47   L  52 
A  48   L  53 
V  49   A  54 
L  50   Q  55 
D  51   S  56 
V  52   L  57 
Q  53   S  58 
G  54   G  59 
I  55   L  60 
A  56   N  61 
T  57   A  62 
V  58   M  63 
T  59   P  64 
P  60   P  65 
A  61   K  66 
I  62   G  67 
V  63   T  68 
Q  64   C  69 
A  65   A  70 
C  66   D  71 
T  67   C  72 
Q  68   S  73 
D  69   D  74 
K  70   D  75 
Q  71   E  76 
A  72   L  77 
G  80   K  78 
E  81   A  79 
W  82   A  80 
D  83   I  81 
K  84   G  82 
I  85   K  83 
K  86   M  84 
K  87   S  85 
D  88   G  86 
M  89   L  87 
TER 
END 
