PFRMAT AL 
TARGET T0060 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25% 
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1gif_B 
P    1 P    2 
F    2 M    3 
L    3 F    4 
E    4 I    5 
L    5 V    6 
D    6 N    7 
T    7 T    8 
N    8 N    9 
L    9 V   10 
P   10 P   11 
A   11 R   12 
N   12 A   13 
R   13 S   14 
V   14 V   15 
P   15 P   16 
A   16 D   17 
G   17 G   18 
L   18 F   19 
E   19 L   20 
K   20 S   21 
R   21 E   22 
L   22 L   23 
C   23 T   24 
A   24 Q   25 
A   25 Q   26 
A   26 L   27 
A   27 A   28 
S   28 Q   29 
I   29 A   30 
L   30 T   31 
G   31 G   32 
K   32 K   33 
P   33 P   34 
A   34 P   35 
D   35 Q   36 
R   36 Y   37 
V   37 I   38 
N   38 A   39 
V   39 V   40 
T   40 H   41 
V   41 V   42 
R   42 V   43 
P   43 P   44 
G   44 D   45 
L   45 Q   46 
A   46 L   47 
M   47 M   48 
A   48 A   49 
L   49 F   50 
S   50 G   51 
G   51 G   52 
S   52 S   53 
T   53 S   54 
E   54 E   55 
P   55 P   56 
C   56 C   57 
A   57 A   58 
Q   58 L   59 
L   59 C   60 
S   60 S   61 
I   61 L   62 
S   62 H   63 
S   63 S   64 
I   64 I   65 
G   65 G   66 
V   66 K   67 
V   67 I   68 
G   68 G   69 
A   70 G   70 
E   71 A   71 
D   72 Q   72 
N   73 N   73 
R   74 R   74 
S   75 S   75 
H   76 Y   76 
S   77 S   77 
A   78 K   78 
H   79 L   79 
F   80 L   80 
F   81 C   81 
E   82 G   82 
F   83 L   83 
L   84 L   84 
T   85 A   85 
K   86 E   86 
E   87 R   87 
L   88 L   88 
A   89 R   89 
L   90 I   90 
G   91 S   91 
Q   92 P   92 
D   93 D   93 
R   94 R   94 
I   95 V   95 
L   96 Y   96 
I   97 I   97 
R   98 N   98 
F   99 Y   99 
F  100 Y  100 
P  101 D  101 
L  102 M  102 
E  103 N  103 
S  104 A  104 
W  105 A  105 
Q  106 N  106 
I  107 V  107 
G  108 G  108 
K  109 W  109 
I  110 N  110 
G  111 N  111 
T  112 S  112 
V  113 T  113 
M  114 F  114 
T  115 A  115 
TER 
END 
