PFRMAT AL 
TARGET T0060 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/17/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0060" has a significant match 
REMARK pdb1fim      13.917     0.501    51.260  MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; 
REMARK                                          SCOP: A+B; Tautomerase/MIF 
REMARK pdb1erw       4.838     0.202    12.278  MOLECULE: THIOREDOXIN; 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1ptf       4.705     0.197    11.815  HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN (HPR) 
REMARK                                          SCOP: A+B; Histidine-containing phosphocarrier proteins (HPr) 
REMARK pdb1brs_D     4.329     0.185    12.954  BARNASE (G SPECIFIC ENDONUCLEASE) (E.C.3.1.27.-) COMPLEXED 
REMARK                                          SCOP: A/B; Barstar (barnase inhibitor) 
REMARK pdb1aac       4.257     0.182    -0.395  MOLECULE: AMICYANIN; 
REMARK                                          SCOP: Beta; Cupredoxins 
REMARK pdb1all_A     4.179     0.180    10.774  MOLECULE: ALLOPHYCOCYANIN; 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1ith_A     4.173     0.180    12.475  HEMOGLOBIN (CYANOMET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1mbd       4.138     0.179     7.811  MYOGLOBIN (DEOXY, $P*H 8.4) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1jon       3.768     0.166     5.545  MOLECULE: GROEL, HSP60 CLASS; 
REMARK                                          SCOP: A/B; The "swivelling" beta/beta/alpha domain 
REMARK pdb1cei       3.690     0.164     3.568  MOLECULE: COLICIN E7 IMMUNITY PROTEIN; 
REMARK                                          SCOP: Alpha; Acyl carrier protein 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0060        PFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALS 
REMARK                | | :.|| ::||#||||:|  .:: :||||...| |:|. | #.    
REMARK pdb1fim      PAFIVNTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFS 
REMARK  
REMARK t0060        GSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFF 
REMARK              |..:|||:|:| .#|  .  ::.. : . |.|.| ||: | :|:| |.|  
REMARK pdb1fim      GTSDPCALCSLHSIGKIGGAQNRNYSKL.LCGLLSDRLHISPDRVYINYY 
REMARK  
REMARK t0060        PLESWQIGKIGTVMTFL 
REMARK              . ..              
REMARK pdb1fim      DANA............. 
REMARK  
PARENT 1fim 
P 1  P 1 
F 2  A 2 
L 3  F 3 
E 4  I 4 
L 5  V 5 
D 6  N 6 
T 7  T 7 
N 8  N 8 
L 9  V 9 
P 10  P 10 
A 11  R 11 
N 12  A 12 
R 13  S 13 
V 14  V 14 
P 15  P 15 
A 16  E 16 
G 17  G 17 
L 18  F 18 
E 19  L 19 
K 20  S 20 
R 21  E 21 
L 22  L 22 
C 23  T 23 
A 24  Q 24 
A 25  Q 25 
A 26  L 26 
A 27  A 27 
S 28  Q 28 
I 29  A 29 
L 30  T 30 
G 31  G 31 
K 32  K 32 
P 33  P 33 
A 34  A 34 
D 35  Q 35 
R 36  Y 36 
V 37  I 37 
N 38  A 38 
V 39  V 39 
T 40  H 40 
V 41  V 41 
R 42  V 42 
P 43  P 43 
G 44  D 44 
L 45  Q 45 
A 46  L 46 
M 47  X 47 
A 48  T 48 
L 49  F 49 
S 50  S 50 
G 51  G 51 
S 52  T 52 
T 53  S 53 
E 54  D 54 
P 55  P 55 
C 56  C 56 
A 57  A 57 
Q 58  L 58 
L 59  C 59 
S 60  S 60 
I 61  L 61 
S 62  H 62 
S 63  S 63 
I 64  I 64 
G 65  G 65 
V 66  K 66 
V 67  I 67 
G 68  G 68 
T 69  G 69 
A 70  A 70 
E 71  Q 71 
D 72  N 72 
N 73  R 73 
R 74  N 74 
S 75  Y 75 
H 76  S 76 
S 77  K 77 
A 78  L 78 
F 80  L 79 
F 81  C 80 
E 82  G 81 
F 83  L 82 
L 84  L 83 
T 85  S 84 
K 86  D 85 
E 87  R 86 
L 88  L 87 
A 89  H 88 
L 90  I 89 
G 91  S 90 
Q 92  P 91 
D 93  D 92 
R 94  R 93 
I 95  V 94 
L 96  Y 95 
I 97  I 96 
R 98  N 97 
F 99  Y 98 
F 100  Y 99 
P 101  D 100 
L 102  A 101 
E 103  N 102 
S 104  A 103 
TER 
END 
