PFRMAT AL 
TARGET T0060 
AUTHOR 5827-4749-3439 
METHOD Threading alignment for T0060 
METHOD 
METHOD Note: this alignment was obtained automatically, and has not been 
METHOD hand-edited. 
METHOD 
METHOD This alignment was created by aligning the target sequence to a 
METHOD library of 3D-1D type threading models.  Matching and gap scores 
METHOD were optimized for discriminating remote homolog sequence-structure 
METHOD alignments from alignments on incorrect folds. 
METHOD 
METHOD This alignment scored significantly higher than any other structure 
METHOD matches. 
METHOD The HMM preferred 1gifA, but this structure does not appear in our 
METHOD fold library because of its close sequence similarity with 1fim. 
METHOD 
MODEL 2 
PARENT 1fim 
P    1    P    1 
F    2    A    2 
L    3    F    3 
E    4    I    4 
L    5    V    5 
D    6    N    6 
T    7    T    7 
N    8    N    8 
L    9    V    9 
P    10    P    10 
A    11    R    11 
N    12    A    12 
R    13    S    13 
V    14    V    14 
P    15    P    15 
A    16    E    16 
G    17    G    17 
L    18    F    18 
E    19    L    19 
K    20    S    20 
R    21    E    21 
L    22    L    22 
C    23    T    23 
A    24    Q    24 
A    25    Q    25 
A    26    L    26 
A    27    A    27 
S    28    Q    28 
I    29    A    29 
L    30    T    30 
G    31    G    31 
K    32    K    32 
P    33    P    33 
A    34    A    34 
D    35    Q    35 
R    36    Y    36 
V    37    I    37 
N    38    A    38 
V    39    V    39 
T    40    H    40 
V    41    V    41 
R    42    V    42 
P    43    P    43 
G    44    D    44 
L    45    Q    45 
A    46    L    46 
A    48    T    48 
L    49    F    49 
S    50    S    50 
G    51    G    51 
S    52    T    52 
T    53    S    53 
E    54    D    54 
P    55    P    55 
C    56    C    56 
A    57    A    57 
Q    58    L    58 
L    59    C    59 
S    60    S    60 
I    61    L    61 
S    62    H    62 
S    63    S    63 
G    65    I    64 
V    66    G    65 
V    67    K    66 
G    68    I    67 
T    69    G    68 
A    70    G    69 
E    71    A    70 
D    72    Q    71 
N    73    N    72 
R    74    R    73 
S    75    N    74 
H    76    Y    75 
S    77    S    76 
A    78    K    77 
H    79    L    78 
F    80    L    79 
F    81    C    80 
E    82    G    81 
F    83    L    82 
L    84    L    83 
T    85    S    84 
K    86    D    85 
E    87    R    86 
L    88    L    87 
A    89    H    88 
L    90    I    89 
G    91    S    90 
Q    92    P    91 
D    93    D    92 
R    94    R    93 
I    95    V    94 
L    96    Y    95 
I    97    I    96 
R    98    N    97 
F    99    Y    98 
F    100    Y    99 
P    101    D    100 
L    102    A    101 
E    103    N    102 
S    104    A    103 
TER 
END 
