PFRMAT AL 
TARGET T0059 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25% 
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and 
METHOD Nicholas 1997. "Classification of the Environment of 
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD 
METHOD This test uses our latest (unpublished) environment 
METHOD classifications and extentions. 
MODEL  1 
PARENT 1cnf 
M    1 F   32 
S    2 S   33 
I    3 L   34 
G    4 P   35 
V    5 S   36 
P    6 P   37 
I    7 D   38 
K    8 Q   39 
V    9 V   40 
L   10 L   41 
H   11 G   42 
E   12 L   43 
A   13 P   44 
E   14 I   45 
G   15 G   46 
H   16 K   47 
I   17 H   48 
V   18 I   49 
T   19 C   52 
C   20 A   53 
E   21 T   54 
T   22 I   55 
N   23 E   56 
T   24 G   57 
G   25 K   58 
E   26 L   59 
V   27 C   60 
Y   28 M   61 
R   29 R   62 
G   30 A   63 
K   31 Y   64 
L   32 T   65 
I   33 P   66 
E   34 T   67 
A   35 S   68 
E   36 M   69 
D   37 V   70 
N   38 D   71 
M   39 E   72 
N   40 I   73 
C   41 G   74 
Q   42 H   75 
M   43 F   76 
S   44 D   77 
N   45 L   78 
I   46 L   79 
T   47 V   80 
V   48 K   81 
T   49 V   82 
Y   50 Y   83 
R   51 F   84 
D   52 K   85 
G   53 N   86 
R   54 E   87 
V   55 H   88 
A   56 P   89 
Q   57 K   90 
L   58 F   91 
E   59 P   92 
Q   60 N   93 
G   65 G   94 
S   66 G   95 
K   67 L   96 
I   68 M   97 
R   69 T   98 
F   70 Q   99 
L   71 Y  100 
I   72 L  101 
L   73 D  102 
P   74 S  103 
D   75 L  104 
TER 
END 
