PFRMAT AL 
TARGET T0059 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK PIR:S54169                 1 ..MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVIC 
REMARK GP:ATTS1964_1              1 ..MLPLSLLRTAQGNPMLVELKNGETYNGYLVNCDTWMNIHLRQVIC 
REMARK GP:CELF32A5_6              1 .MVLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIF 
REMARK GP:SPBC30D10_6             1 ..MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIR 
REMARK SW:SMD3_YEAST              3 MNGIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIA 
REMARK SW:USS1_YEAST              1 ..MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTE 
REMARK GP:YSCSWI4A_1              1 ..MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTE 
REMARK SW:SMD3_HUMAN              2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITV 
REMARK GP:AF038598_1              2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITV 
REMARK GP:MMU85207_1              1 ..MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISV 
REMARK SW:SMD1_HUMAN              1 ..MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKM 
REMARK SW:SMD1_CAEEL              1 ..MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSM 
REMARK GP:MMU85207_2             36 .VRLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISV 
REMARK GP:BFZ83273_1              1 ..MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDISV 
REMARK SW:YBC6_YEAST              1 ..MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISC 
REMARK GP:SPAC27D7_7              1 ..MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKM 
REMARK SW:SMD1_YEAST              1 ..MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKL 
REMARK GP:DRODEBB_1               6 PI.NPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEE 
REMARK PIR:S55053                 2 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEE 
REMARK PIR:S61173                45 EGSVTTEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATE 
REMARK GP:ATAC002333_8           11 TTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEE 
REMARK    
REMARK PIR:S54169                46 TSKDG..........................DRFWRMPECYVRGNTIKYL 
REMARK GP:ATTS1964_1             46 TSKDG..........................DRLWRMTECYIRGNTIKYL 
REMARK GP:CELF32A5_6             47 TSKDG..........................DKFFKMSEAYVRGSTIKYL 
REMARK GP:SPBC30D10_6            46 TMPDG..........................DKFFRLPECYIRGNNIKYL 
REMARK SW:SMD3_YEAST             50 TEPQG...........................AVTHMDQIFVRGSQIKFI 
REMARK SW:USS1_YEAST             46 YSEESA........IN........SEDNAESSKAVKLNEIYIRGTFIKFI 
REMARK GP:YSCSWI4A_1             46 YSEESA........IN........SEDNAESSKAVKLNEIYIRGTFIKFI 
REMARK SW:SMD3_HUMAN             49 TYRDG...........................RVAQLEQVYIRGSKIRFL 
REMARK GP:AF038598_1             49 TYRDG...........................RTANLENVYIRGSKIRFL 
REMARK GP:MMU85207_1             46 TDPEKY.........................PHMLSVKNCFIRGSVVRYV 
REMARK SW:SMD1_HUMAN             46 TLKNR...........................EPVQLETLSIRGNNIRYF 
REMARK SW:SMD1_CAEEL             46 TVKNK...........................EPVKLDTLSIRGNNIRYI 
REMARK GP:MMU85207_2             82 TDPEKY.........................PHMLSVKNCFIRGSVVRYV 
REMARK GP:BFZ83273_1             46 TDPEKY.........................PHMLSVKNCFIRGSVVRYV 
REMARK SW:YBC6_YEAST             46 TDEKKY.........................PHLGSVRNIFIRGSTVRYV 
REMARK GP:SPAC27D7_7             46 TVKGR...........................EPVPVETLSIRGNNIRYY 
REMARK SW:SMD1_YEAST             46 TLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIASLQYINIRGNTIRQI 
REMARK GP:DRODEBB_1              52 VIEGS.........................V..TGNLGEVLIRCNNVLYI 
REMARK PIR:S55053                50 YIDGA.........................L..SGHLGEVLIRCNNVLYI 
REMARK PIR:S61173                92 HYESN.....................NNKLL.NKFN.SDVFLRGTQVMYI 
REMARK GP:ATAC002333_8           58 YVNGQ.........................L..KNTYGDAFVRGNNVLYI 
REMARK    
REMARK PIR:S54169                70 RVPD 
REMARK GP:ATTS1964_1             70 RVPD 
REMARK GP:CELF32A5_6             71 RIPE 
REMARK GP:SPBC30D10_6            70 RIQD 
REMARK SW:SMD3_YEAST             73 VVPD 
REMARK SW:USS1_YEAST             80 KLQD 
REMARK GP:YSCSWI4A_1             80 KLQD 
REMARK SW:SMD3_HUMAN             72 ILPD 
REMARK GP:AF038598_1             72 ILPD 
REMARK GP:MMU85207_1             71 QLPA 
REMARK SW:SMD1_HUMAN             69 ILPD 
REMARK SW:SMD1_CAEEL             69 ILPD 
REMARK GP:MMU85207_2            107 QLPA 
REMARK GP:BFZ83273_1             71 QLSA 
REMARK SW:YBC6_YEAST             71 YLNK 
REMARK GP:SPAC27D7_7             69 ILPD 
REMARK SW:SMD1_YEAST             96 ILPD 
REMARK GP:DRODEBB_1              75 KGME 
REMARK PIR:S55053                73 RGVE 
REMARK PIR:S61173               119 SEQK 
REMARK GP:ATAC002333_8           81 STTK 
REMARK    
REMARK    
REMARK Search results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1cg2A               +   6.63   4.49  389. ! Resolution=2.50  389 residues MOL_ID: 1; 
REMARK pdb90:1fmk                +   4.30   3.60  431. !  Resolution=1.50  431 residues MOL_ID: 1; 
REMARK pdb90:1amy                +   4.01   3.49  403. !  Resolution=2.80  403 residues ALPHA-1,4 GLYCAN-4-GLUCANOHYDROLASE (ALPHA-AMYLAS 
REMARK pdb90:1chmA               +   3.66   3.35  401. ! Resolution=1.90  401 residues CREATINE AMIDINOHYDROLASE (E.C.3.5.3.3) 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0059.pep                  2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR 
REMARK 1CG2A                      9 QA.ATDEQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVT 
REMARK   Consensus                1 PIMMPIRFLKDLQGHPVVVELKNGQTYRGKLISVDGYMDIHLRDVTITIK 
REMARK    
REMARK t0059.pep                 52 DG...........................RVAQLEQVYIRGSKIRFLILP 
REMARK 1CG2A                     58 RS.KSAGLVVGDNIVGKIKGRGGKN.LLL.MSHMDTVYLKGILAKAPFRV 
REMARK   Consensus               51 DGYLDKLDSDGIAMASLYLTGGQDPKLLDRMVRLDDVYIRGNNIRYIRLP 
REMARK    
REMARK t0059.pep                 75 D 
REMARK 1CG2A                    105 E 
REMARK   Consensus              101 D 
REMARK    
MODEL 1  
PARENT 1CG2A 
S   2    Q  34 
I   3    A  35 
V   5    A  36 
P   6    T  37 
I   7    D  38 
K   8    E  39 
V   9    Q  40 
L  10    P  41 
H  11    A  42 
E  12    V  43 
A  13    I  44 
E  14    K  45 
G  15    T  46 
H  16    L  47 
I  17    E  48 
V  18    K  49 
T  19    L  50 
C  20    V  51 
E  21    N  52 
T  22    I  53 
N  23    E  54 
T  24    T  55 
G  25    G  56 
E  26    T  57 
V  27    G  58 
Y  28    D  59 
R  29    A  60 
G  30    E  61 
K  31    G  62 
L  32    I  63 
I  33    A  64 
E  34    A  65 
A  35    A  66 
E  36    G  67 
D  37    N  68 
N  38    F  69 
M  39    L  70 
N  40    E  71 
C  41    A  72 
Q  42    E  73 
M  43    L  74 
S  44    K  75 
N  45    N  76 
I  46    L  77 
T  47    G  78 
V  48    F  79 
T  49    T  80 
Y  50    V  81 
R  51    T  82 
D  52    R  83 
G  53    S  84 
V  55    M 110 
A  56    S 111 
Q  57    H 112 
L  58    M 113 
E  59    D 114 
Q  60    T 115 
V  61    V 116 
Y  62    Y 117 
I  63    L 118 
R  64    K 119 
G  65    G 120 
S  66    I 121 
K  67    L 122 
I  68    A 123 
R  69    K 124 
F  70    A 125 
L  71    P 126 
I  72    F 127 
L  73    R 128 
P  74    V 129 
D  75    E 130 
TER 
END 
