PFRMAT AL 
TARGET T0059 
AUTHOR 3707-4066-9021 
REMARK FORESST ordered by Z scores, length ratios and J scores using 
REMARK SIMPA with homologues as secondary structure predictions. 
METHOD FORESST is a fold recognition method based on secondary structure 
METHOD predictions and hidden Markov models of observed secondary structures. 
METHOD Di Francesco V, Garnier J and Munson PJ., 1997, Protein Topology  
METHOD recognition METHOD from secondary structure sequences: application  
METHOD of the hidden Markov model to the alpha class proteins.  
METHOD J. Mol. Biol.267:446-463. 
MODEL  1 
PARENT 1pnkB 
V  5    V   75 
P  6    D   76 
I  7    I   77 
K  8    F   78 
V  9    A   79 
L 10    E   80 
H 11    R   81 
E 12    L   82 
A 13    S   83 
E 14    A   84 
G 15    E   85 
H 16    K   86 
I 17    P   87 
V 18    G   88 
T 19    Y   89 
C 20    Y   90 
E 21    L   91 
T 22    H   92 
N 23    N   93 
T 24    G   94 
G 25    K   95 
E 26    W   96 
V 27    V   97 
Y 28    K   98 
R 29    M   99 
G 30    L  100 
K 31    S  101 
L 32    R  102 
I 33    E  103 
E 34    E  104 
A 35    T  105 
E 36    I  106 
D 37    T  107 
N 38    V  108 
M 39    K  109 
N 40    N  110 
C 41    G  111 
Q 42    Q  112 
M 43    A  113 
S 44    E  114 
N 45    T  115 
I 46    F  116 
T 47    T  117 
V 48    V  118 
T 49    W  119 
Y 50    R  120 
R 51    T  121 
D 52    V  122 
G 53    H  123 
R 54    G  124 
V 55    N  125 
A 56    I  126 
Q 60    L  127 
V 61    Q  128 
Y 62    T  129 
I 63    D  130 
R 64    Q  131 
G 65    T  132 
S 66    T  133 
K 67    Q  134 
I 68    T  135 
R 69    A  136 
F 70    Y  137 
L 71    A  138 
I 72    K  139 
L 73    S  140 
P 74    R  141 
TER 
END 
