PFRMAT AL 
TARGET T0058 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_10% 
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1udi_E 
M    1 F   26 
A    2 L   27 
N    3 I   28 
E    4 D   29 
L    5 D   30 
T    6 A   31 
W    7 W   32 
H    8 R   33 
D    9 P   34 
L   11 L   35 
A   12 M   36 
E   13 E   37 
E   14 P   38 
K   15 E   39 
Q   16 L   40 
Q   17 A   41 
P   18 N   42 
Y   19 P   43 
F   20 L   44 
L   21 T   45 
N   22 A   46 
T   23 H   47 
L   24 L   48 
Q   25 L   49 
T   26 A   50 
V   27 E   51 
A   28 Y   52 
S   29 N   53 
E   30 R   54 
R   31 R   55 
Q   32 C   56 
S   33 Q   57 
G   34 T   58 
V   35 E   59 
T   36 E   60 
I   37 V   61 
Y   38 L   62 
P   39 P   63 
P   40 P   64 
Q   41 R   65 
K   42 E   66 
D   43 D   67 
V   44 V   68 
F   45 F   69 
N   46 S   70 
A   47 W   71 
F   48 T   72 
R   49 R   73 
F   50 Y   74 
T   51 C   75 
E   52 T   76 
L   53 P   77 
G   54 D   78 
D   55 E   79 
V   56 V   80 
K   57 R   81 
V   58 V   82 
V   59 V   83 
I   60 I   84 
L   61 I   85 
G   62 G   86 
Q   63 Q   87 
D   64 D   88 
P   65 P   89 
Y   66 Y   90 
H   67 H   91 
G   68 H   92 
P   69 P   93 
G   70 G   94 
Q   71 Q   95 
A   72 A   96 
H   73 H   97 
G   74 G   98 
L   75 L   99 
A   76 A  100 
F   77 F  101 
S   78 S  102 
V   79 V  103 
R   80 R  104 
P   81 A  105 
G   82 N  106 
I   83 V  107 
A   84 P  108 
I   85 P  109 
P   86 P  110 
P   87 P  111 
S   88 S  112 
L   89 L  113 
L   90 R  114 
N   91 N  115 
M   92 V  116 
Y   93 L  117 
K   94 A  118 
E   95 A  119 
L   96 V  120 
E   97 K  121 
N   98 N  122 
T   99 C  123 
I  100 Y  124 
P  101 P  125 
G  102 E  126 
F  103 A  127 
T  104 R  128 
R  105 M  129 
P  106 S  130 
N  107 G  131 
H  108 H  132 
G  109 G  133 
Y  110 C  134 
L  111 L  135 
E  112 E  136 
S  113 K  137 
W  114 W  138 
A  115 A  139 
R  116 R  140 
Q  117 D  141 
G  118 G  142 
V  119 V  143 
L  120 L  144 
L  121 L  145 
L  122 L  146 
N  123 N  147 
T  124 T  148 
V  125 T  149 
L  126 L  150 
T  127 T  151 
V  128 V  152 
R  129 K  153 
A  130 R  154 
G  131 G  155 
Q  132 A  156 
A  133 A  157 
H  134 A  158 
S  135 S  159 
H  136 H  160 
A  137 S  161 
S  138 R  162 
L  139 I  163 
G  140 G  164 
W  141 W  165 
E  142 D  166 
T  143 R  167 
F  144 F  168 
T  145 V  169 
D  146 G  170 
K  147 G  171 
V  148 V  172 
I  149 I  173 
S  150 R  174 
L  151 R  175 
I  152 L  176 
N  153 A  177 
Q  154 A  178 
H  155 R  179 
R  156 R  180 
E  157 P  181 
G  158 G  182 
V  159 L  183 
V  160 V  184 
F  161 F  185 
L  162 M  186 
L  163 L  187 
W  164 W  188 
G  165 G  189 
S  166 T  190 
H  167 H  191 
A  168 A  192 
Q  169 Q  193 
K  170 N  194 
K  171 A  195 
G  172 I  196 
A  173 R  197 
I  174 P  198 
I  175 D  199 
D  176 P  200 
K  177 R  201 
Q  178 V  202 
H  180 H  203 
H  181 C  204 
V  182 V  205 
L  183 L  206 
K  184 K  207 
A  185 F  208 
P  186 S  209 
H  187 H  210 
P  188 P  211 
S  189 S  212 
P  190 P  213 
L  191 L  214 
S  192 S  215 
H  194 K  216 
R  195 V  217 
G  196 P  218 
F  197 F  219 
F  198 G  220 
G  199 T  221 
C  200 C  222 
N  201 Q  223 
H  202 H  224 
F  203 F  225 
V  204 L  226 
L  205 V  227 
A  206 A  228 
N  207 N  229 
Q  208 R  230 
W  209 Y  231 
L  210 L  232 
E  211 E  233 
Q  212 T  234 
R  213 R  235 
G  214 S  236 
E  215 I  237 
T  216 S  238 
P  217 P  239 
I  218 I  240 
D  219 D  241 
W  220 W  242 
M  221 S  243 
P  222 V  244 
TER 
END 
