PFRMAT AL 
TARGET T0058 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/17/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0058" has a significant match 
REMARK pdb1akz      21.335     0.574   127.203  MOLECULE: URACIL-DNA GLYCOSYLASE; 
REMARK                                          SCOP: A/B; Uracil-DNA glycosylase 
REMARK pdb1lau_E    17.367     0.475    90.925  MOLECULE: URACIL-DNA GLYCOSYLASE; 
REMARK                                          SCOP: A/B; Uracil-DNA glycosylase 
REMARK pdb1ad2       4.863     0.160     8.457  MOLECULE: RIBOSOMAL PROTEIN L1; 
REMARK                                          SCOP: Multi; Ribosomal protein L1 
REMARK pdb1rro       4.125     0.142    13.630  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1mng_A     4.002     0.139   -13.779  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 93-203: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb2trx_A     3.998     0.138    21.004  THIOREDOXIN 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1dyr       3.948     0.137     8.390  MOLECULE: DIHYDROFOLATE REDUCTASE; 
REMARK                                          SCOP: A/B; Dihydrofolate reductases 
REMARK pdb1isc_A     3.632     0.129    -2.387  IRON(III) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1ukz       3.626     0.129   -15.761  URIDYLATE KINASE (E.C.2.7.4.-) COMPLEXED WITH ADP AND AMP 
REMARK                                          SCOP: A/B; P-loop containing nucleotide triphosphate hydrolases 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0058        ...MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNA 
REMARK                 :. :|  .: |.|  :.| |   :. :: |:::   ||||.:::| | 
REMARK pdb1akz      MEFFGESW..KKHLSGEFGKPYFIKLMGFVAEERKH.YTVYPPPHQVFTW 
REMARK  
REMARK t0058        FRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELE 
REMARK              |:  .| :| |||||:#:.  ||.: |:.| ::|.   |: |  |:| |: 
REMARK pdb1akz      TQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELS 
REMARK  
REMARK t0058        NTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDK 
REMARK              :|.  :.|:..#.|  .|  ||||| ..|| |.|  ..|:  ||. |.|. 
REMARK pdb1akz      TDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDA 
REMARK  
REMARK t0058        VISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGF 
REMARK              || .| |: ||.|||.||. |||  .#.:|:|. ||: |.:.: ..  |: 
REMARK pdb1akz      VVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGF 
REMARK  
REMARK t0058        FGCNHFVLANQWLEQRGETPIDWMPVLPAESE 
REMARK               | |:|# |.: .|:.|  |:|| ::       
REMARK pdb1akz      FGCRHFSKTNELLQKSGKKPIDWKEL...... 
REMARK  
PARENT 1akz 
M 1  F 85 
A 2  G 86 
N 3  E 87 
E 4  S 88 
L 5  W 89 
H 8  K 90 
D 9  K 91 
V 10  H 92 
L 11  L 93 
A 12  S 94 
E 13  G 95 
E 14  E 96 
K 15  F 97 
Q 16  G 98 
Q 17  K 99 
P 18  P 100 
Y 19  Y 101 
F 20  F 102 
L 21  I 103 
N 22  K 104 
T 23  L 105 
L 24  M 106 
Q 25  G 107 
T 26  F 108 
V 27  V 109 
A 28  A 110 
S 29  E 111 
E 30  E 112 
R 31  R 113 
Q 32  K 114 
S 33  H 115 
V 35  Y 116 
T 36  T 117 
I 37  V 118 
Y 38  Y 119 
P 39  P 120 
P 40  P 121 
Q 41  P 122 
K 42  H 123 
D 43  Q 124 
V 44  V 125 
F 45  F 126 
N 46  T 127 
A 47  W 128 
F 48  T 129 
R 49  Q 130 
F 50  M 131 
T 51  C 132 
E 52  D 133 
L 53  I 134 
G 54  K 135 
D 55  D 136 
V 56  V 137 
K 57  K 138 
V 58  V 139 
V 59  V 140 
I 60  I 141 
L 61  L 142 
G 62  G 143 
Q 63  Q 144 
D 64  D 145 
P 65  P 146 
Y 66  Y 147 
H 67  H 148 
G 68  G 149 
P 69  P 150 
G 70  N 151 
Q 71  Q 152 
A 72  A 153 
H 73  H 154 
G 74  G 155 
L 75  L 156 
A 76  C 157 
F 77  F 158 
S 78  S 159 
V 79  V 160 
R 80  Q 161 
P 81  R 162 
G 82  P 163 
I 83  V 164 
A 84  P 165 
I 85  P 166 
P 86  P 167 
P 87  P 168 
S 88  S 169 
L 89  L 170 
L 90  E 171 
N 91  N 172 
M 92  I 173 
Y 93  Y 174 
K 94  K 175 
E 95  E 176 
L 96  L 177 
E 97  S 178 
N 98  T 179 
T 99  D 180 
I 100  I 181 
P 101  E 182 
G 102  D 183 
F 103  F 184 
T 104  V 185 
R 105  H 186 
P 106  P 187 
N 107  G 188 
H 108  H 189 
G 109  G 190 
Y 110  D 191 
L 111  L 192 
E 112  S 193 
S 113  G 194 
W 114  W 195 
A 115  A 196 
R 116  K 197 
Q 117  Q 198 
G 118  G 199 
V 119  V 200 
L 120  L 201 
L 121  L 202 
L 122  L 203 
N 123  N 204 
T 124  A 205 
V 125  V 206 
L 126  L 207 
T 127  T 208 
V 128  V 209 
R 129  R 210 
A 130  A 211 
G 131  H 212 
Q 132  Q 213 
A 133  A 214 
H 134  N 215 
S 135  S 216 
H 136  H 217 
A 137  K 218 
S 138  E 219 
L 139  R 220 
G 140  G 221 
W 141  W 222 
E 142  E 223 
T 143  Q 224 
F 144  F 225 
T 145  T 226 
D 146  D 227 
K 147  A 228 
V 148  V 229 
I 149  V 230 
S 150  S 231 
L 151  W 232 
I 152  L 233 
N 153  N 234 
Q 154  Q 235 
H 155  N 236 
R 156  S 237 
E 157  N 238 
G 158  G 239 
V 159  L 240 
V 160  V 241 
F 161  F 242 
L 162  L 243 
L 163  L 244 
W 164  W 245 
G 165  G 246 
S 166  S 247 
H 167  Y 248 
A 168  A 249 
Q 169  Q 250 
K 170  K 251 
K 171  K 252 
G 172  G 253 
A 173  S 254 
I 174  A 255 
I 175  I 256 
D 176  D 257 
K 177  R 258 
Q 178  K 259 
R 179  R 260 
H 180  H 261 
H 181  H 262 
V 182  V 263 
L 183  L 264 
K 184  Q 265 
A 185  T 266 
P 186  A 267 
H 187  H 268 
P 188  P 269 
S 189  S 270 
P 190  P 271 
L 191  L 272 
S 192  S 273 
A 193  V 274 
H 194  Y 275 
R 195  R 276 
G 196  G 277 
F 197  F 278 
F 198  F 279 
G 199  G 280 
C 200  C 281 
N 201  R 282 
H 202  H 283 
F 203  F 284 
V 204  S 285 
L 205  K 286 
A 206  T 287 
N 207  N 288 
Q 208  E 289 
W 209  L 290 
L 210  L 291 
E 211  Q 292 
Q 212  K 293 
R 213  S 294 
G 214  G 295 
E 215  K 296 
T 216  K 297 
P 217  P 298 
I 218  I 299 
D 219  D 300 
W 220  W 301 
M 221  K 302 
P 222  E 303 
V 223  L 304 
TER 
END 
