PFRMAT AL 
TARGET T0056 
AUTHOR 7169-6295-1599 
METHOD T0056 and its homologs were threaded on the structural library composed of 
METHOD PDB rel. 83. A homolog (sp| P71715) showed good compatibility with 1bifD  
METHOD C-terminal domain. It has 6 alpha helices, and it coincides with the submitter's 
METHOD comment (T0056 has 6 helices). Furthermore in the structural template 
METHOD search with the helix positions, 1bmf_D terminal domain fits best. 
MODEL 2 
PARENT 1bmf_D 
M 23 M 358 
K 24 D 359 
V 25 P 360 
P 26 N 361 
P 27 I 362 
H 28 V 363 
S 29 G 364 
I 30 S 365 
E 31 E 366 
A 32 H 367 
E 33 Y 368 
Q 34 D 369 
S 35 V 370 
V 36 A 371 
L 37 R 372 
G 38 G 373 
G 39 V 374 
L 40 Q 375 
M 41 K 376 
L 42 I 377 
D 43 L 378 
N 44 Q 379 
E 45 D 380 
R 46 Y 381 
W 47 K 382 
D 48 S 383 
D 49 L 384 
V 50 Q 385 
A 51 D 386 
E 52 I 387 
R 53 I 388 
V 54 A 389 
V 55 I 390 
A 56 L 391 
D 57 G 392 
D 58 M 393 
F 59 D 394 
Y 60 E 395 
T 61 L 396 
R 62 S 397 
P 63 E 398 
H 64 E 399 
R 65 D 400 
H 66 K 401 
I 67 L 402 
F 68 T 403 
T 69 V 404 
E 70 S 405 
M 71 R 406 
A 72 A 407 
R 73 R 408 
L 74 K 409 
Q 75 I 410 
E 76 Q 411 
S 77 R 412 
G 78 F 413 
S 79 L 414 
P 80 S 415 
I 81 Q 416 
D 82 P 417 
L 83 F 418 
I 84 Q 419 
T 85 V 420 
L 86 A 421 
A 87 E 422 
E 88 V 423 
S 89 F 424 
L 90 T 425 
E 91 G 426 
R 92 H 427 
Q 93 L 428 
G 94 G 429 
Q 95 K 430 
L 96 L 431 
D 97 V 432 
S 98 P 433 
V 99 L 434 
G 100 K 435 
G 101 E 436 
F 102 T 437 
A 103 I 438 
Y 104 K 439 
L 105 G 440 
A 106 F 441 
E 107 Q 442 
L 108 Q 443 
S 109 I 444 
K 110 L 445 
N 111 A 446 
T 112 G 447 
P 113 E 448 
S 114 Y 449 
A 115 D 450 
A 116 H 451 
N 117 L 452 
I 118 P 453 
S 119 E 454 
A 120 Q 455 
Y 121 A 456 
A 122 F 457 
D 123 Y 458 
I 124 I 463 
V 125 E 464 
R 126 E 465 
E 127 A 466 
R 128 V 467 
A 129 A 468 
V 130 K 469 
V 131 A 470 
R 132 D 471 
E 133 K 472 
M 134 L 473 
I 135 A 474 
S 136 E 475 
TER 
END 
