PFRMAT AL 
TARGET T0055 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/14/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0055" has a significant match 
REMARK pdb1esl       5.871     0.209    24.960  E-SELECTIN (LECTIN AND EGF DOMAINS, RESIDUES 1 - 157) 
REMARK                                          SCOP: 1-118: A+B; C-type lectin 
REMARK                                          SCOP: 119-156: Small; EGF-like module 
REMARK pdb1cei       5.190     0.190     7.676  MOLECULE: COLICIN E7 IMMUNITY PROTEIN; 
REMARK                                          SCOP: Alpha; Acyl carrier protein 
REMARK pdb5nul       5.107     0.188     7.908  MOLECULE: FLAVODOXIN; 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1rro       4.637     0.174     3.409  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb2trx_A     4.599     0.173     5.495  THIOREDOXIN 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1lit       4.106     0.159    -2.100  MOLECULE: LITHOSTATHINE; 
REMARK                                          SCOP: A+B; C-type lectin-like 
REMARK pdb1mai       3.946     0.155     5.658  MOLECULE: PHOSPHOLIPASE C DELTA-1; 
REMARK                                          SCOP: Beta; PH domain-like 
REMARK pdb1jon       3.714     0.148    -9.070  MOLECULE: GROEL, HSP60 CLASS; 
REMARK                                          SCOP: A/B; The "swivelling" beta/beta/alpha domain 
REMARK pdb1brs_D     3.575     0.144     4.994  BARNASE (G SPECIFIC ENDONUCLEASE) (E.C.3.1.27.-) COMPLEXED 
REMARK                                          SCOP: A/B; Barstar (barnase inhibitor) 
REMARK pdb5pal       3.483     0.142     1.747  PARVALBUMIN (ALPHA LINEAGE) 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0055        MDYEILFSDETMNYADAGTYCQSRGMALVSSAMRDSTMVKAIL.AFTEVK 
REMARK                . |#|::: | . .|  .|:: |   |   ||.. |||:|  .: ::: 
REMARK pdb1esl      ..WSYNTSTEAMTYDEASAYCQQRYTHLV..AIQNKEEIEYLNSILSYSP 
REMARK  
REMARK t0055        GHDYWVGADNLQDGAYNFLWNDGVSLPTDSDLWSPNEPSNPQSWQLCVQI 
REMARK               : |:| . .. || | | .. | .|. | | | | .|.... #. |||| 
REMARK pdb1esl      SY.YWIGI.RKVNNVWVWVGT.QKPLTEEAKNWAPGEPNNRQKDEDCVEI 
REMARK  
REMARK t0055        WSKYN....LLDDVGCGGARRVICEKELDD.................... 
REMARK              | :.:     |    |  #: |||#: |                       
REMARK pdb1esl      YIKREKDVGMWNDERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCK 
REMARK  
REMARK t0055        .............. 
REMARK                             
REMARK pdb1esl      CDPGFSGLKCEQIV 
REMARK  
PARENT 1esl 
Y 3  W 1 
E 4  S 2 
I 5  Y 3 
L 6  N 4 
F 7  T 5 
S 8  S 6 
D 9  T 7 
E 10  E 8 
T 11  A 9 
M 12  M 10 
N 13  T 11 
Y 14  Y 12 
A 15  D 13 
D 16  E 14 
A 17  A 15 
G 18  S 16 
T 19  A 17 
Y 20  Y 18 
C 21  C 19 
Q 22  Q 20 
S 23  Q 21 
R 24  R 22 
G 25  Y 23 
M 26  T 24 
A 27  H 25 
L 28  L 26 
V 29  V 27 
A 32  A 28 
M 33  I 29 
R 34  Q 30 
D 35  N 31 
S 36  K 32 
T 37  E 33 
M 38  E 34 
V 39  I 35 
K 40  E 36 
A 41  Y 37 
I 42  L 38 
L 43  N 39 
A 44  I 41 
F 45  L 42 
T 46  S 43 
E 47  Y 44 
V 48  S 45 
K 49  P 46 
G 50  S 47 
H 51  Y 48 
Y 53  Y 49 
W 54  W 50 
V 55  I 51 
G 56  G 52 
A 57  I 53 
N 59  R 54 
L 60  K 55 
Q 61  V 56 
D 62  N 57 
G 63  N 58 
A 64  V 59 
Y 65  W 60 
N 66  V 61 
F 67  W 62 
L 68  V 63 
W 69  G 64 
N 70  T 65 
G 72  Q 66 
V 73  K 67 
S 74  P 68 
L 75  L 69 
P 76  T 70 
T 77  E 71 
D 78  E 72 
S 79  A 73 
D 80  K 74 
L 81  N 75 
W 82  W 76 
S 83  A 77 
P 84  P 78 
N 85  G 79 
E 86  E 80 
P 87  P 81 
S 88  N 82 
N 89  N 83 
P 90  R 84 
Q 91  Q 85 
S 92  K 86 
W 93  D 87 
Q 94  E 88 
L 95  D 89 
C 96  C 90 
V 97  V 91 
Q 98  E 92 
I 99  I 93 
W 100  Y 94 
S 101  I 95 
K 102  K 96 
Y 103  R 97 
N 104  E 98 
L 105  M 103 
L 106  W 104 
D 107  N 105 
D 108  D 106 
V 109  E 107 
G 110  R 108 
C 111  C 109 
G 112  S 110 
G 113  K 111 
A 114  K 112 
R 115  K 113 
R 116  L 114 
V 117  A 115 
I 118  L 116 
C 119  C 117 
E 120  Y 118 
K 121  T 119 
E 122  A 120 
L 123  A 121 
D 124  C 122 
D 125  T 123 
TER 
END 
