PFRMAT AL 
TARGET T0054 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 6/24/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,329 domain-based structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0054" has a significant match 
REMARK 2mbr_b        5.957     0.184    -1.950  MOLECULE: URIDINE DIPHOSPHO-N-ACETYLENOLPYRUVYLGLUCOSAMINE 
REMARK 1delAb_A      4.073     0.138    13.434  MOLECULE: DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE; 
REMARK 1rvaAa_A      3.883     0.134    12.481  ECO RV ENDONUCLEASE (E.C.3.1.21.4) COMPLEXED WITH SUBSTRATE 
REMARK 1isaAb_A      3.605     0.127     5.622  IRON(II) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) 
REMARK 1qapAb_A      3.403     0.122     8.896  MOLECULE: QUINOLINIC ACID PHOSPHORIBOSYLTRANSFERASE; 
REMARK pdb1rro       3.390     0.122     3.581  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1wod       3.382     0.121    -7.540  MOLECULE: MODA; 
REMARK 1bcrAa_A      3.158     0.116    16.098  MOLECULE: SERINE CARBOXYPEPTIDASE II; 
REMARK 233l_a        3.136     0.115     4.177  MOLECULE: T4 LYSOZYME; 
REMARK pdb3hbi_A     3.109     0.115    -1.527  MOLECULE: SCAPHARCA DIMERIC HEMOGLOBIN; 
REMARK pdb1nfo       3.082     0.114    -8.920  MOLECULE: APOLIPOPROTEIN E2; 
REMARK pdb1pij       3.082     0.114     2.155  HIGH POTENTIAL IRON SULFUR PROTEIN MUTANT WITH ALA 1 AND 
REMARK pdb2fx2       3.077     0.114    -8.608  FLAVODOXIN 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK 1ghsAb_A      3.076     0.114     7.493  1,3-BETA-GLUCANASE (E.C.3.2.1.39) 
REMARK 1prr_b        3.020     0.113    10.761  DEVELOPMENT-SPECIFIC PROTEIN S (SPORE COAT PROTEIN S) 
REMARK  
MODEL  2 
REMARK Sequence alignment follows: 
REMARK t0054        MEIGFTFLDEIVHGVRWDAKYATWDNFTGKPV....DGYEVNRIVGTYEL 
REMARK                                        #|| :|    |||:|| |. ..:| 
REMARK 2mbr_b       ..........................IKGIEIHDEPDAWYLH.VGAGENW 
REMARK  
REMARK t0054        AESLLKAKELAATQGYGLLLWDGYRPKRAVNCFMQWAAQPENNLTKESYY 
REMARK               | |||:   |  .|| .|.|  : ||:..::| :|||  #  |.|#. | 
REMARK 2mbr_b       HR.LVKY...TLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAY 
REMARK  
REMARK t0054        PNIDRTEMISKGYVASKSSH.SRGSAIDLTLYRLDTGELVPMGSRFDFMD 
REMARK               .| . :   :#:|. ||.. :..||:   |.. ..|::|   # |.| . 
REMARK 2mbr_b       VDSVELATGKQVRLTAKECRFGYRDSI...FKHEYQDRFAIVAVGLRLPK 
REMARK  
REMARK t0054        ERSHHAANGISCNEAQNRRRLRSIMENSGFEAYSLEWWHYVLRDEPYPNS 
REMARK              ||:  . .| : .| .  .  :. :     |.:.                 
REMARK 2mbr_b       EWQPVLTYG.DLTRLDPTTVTPQQVFNAVCHMRT................ 
REMARK  
REMARK t0054        YFDFPVK 
REMARK                      
REMARK 2mbr_b       ....... 
REMARK  
PARENT 2mbr 
F 27  I 67 
T 28  K 68 
G 29  G 69 
K 30  I 70 
P 31  E 71 
V 32  I 72 
D 33  D 77 
G 34  A 78 
Y 35  W 79 
E 36  Y 80 
V 37  L 81 
N 38  H 82 
I 40  V 83 
V 41  G 84 
G 42  A 85 
T 43  G 86 
Y 44  E 87 
E 45  N 88 
L 46  W 89 
A 47  H 90 
E 48  R 91 
L 50  L 92 
L 51  V 93 
K 52  K 94 
A 53  Y 95 
A 57  T 96 
A 58  L 97 
T 59  Q 98 
Q 60  E 99 
G 61  G 100 
Y 62  M 101 
G 63  P 102 
L 64  G 103 
L 65  L 104 
L 66  E 105 
W 67  N 106 
D 68  L 107 
G 69  A 108 
Y 70  L 109 
R 71  I 110 
P 72  P 111 
K 73  G 112 
R 74  C 113 
A 75  V 114 
V 76  G 115 
N 77  S 116 
C 78  S 117 
F 79  P 118 
M 80  I 119 
Q 81  Q 120 
W 82  N 121 
A 83  I 122 
A 84  G 123 
Q 85  A 124 
P 86  Y 125 
E 87  G 126 
N 88  V 127 
N 89  E 128 
L 90  L 129 
T 91  Q 130 
K 92  R 131 
E 93  V 132 
S 94  C 133 
Y 95  A 134 
Y 96  Y 135 
P 97  V 136 
N 98  D 137 
I 99  S 138 
D 100  V 139 
R 101  E 140 
T 102  L 141 
E 103  A 142 
M 104  T 143 
I 105  G 144 
S 106  K 145 
K 107  Q 146 
G 108  V 147 
Y 109  R 148 
V 110  L 149 
A 111  T 150 
S 112  A 151 
K 113  K 152 
S 114  E 153 
S 115  C 154 
H 116  R 155 
S 117  G 157 
R 118  Y 158 
G 119  R 159 
S 120  D 160 
A 121  S 161 
I 122  I 162 
L 126  F 163 
Y 127  K 164 
R 128  H 165 
L 129  E 166 
D 130  Y 167 
T 131  Q 168 
G 132  D 169 
E 133  R 170 
L 134  F 171 
V 135  A 172 
P 136  I 173 
M 137  V 174 
G 138  A 175 
S 139  V 176 
R 140  G 177 
F 141  L 178 
D 142  R 179 
F 143  L 180 
M 144  P 181 
D 145  K 182 
E 146  E 183 
R 147  W 184 
S 148  Q 185 
H 149  P 186 
H 150  V 187 
A 151  L 188 
A 152  T 189 
N 153  Y 190 
G 154  G 191 
S 156  D 192 
C 157  L 193 
N 158  T 194 
E 159  R 195 
A 160  L 196 
Q 161  D 197 
N 162  P 198 
R 163  T 199 
R 164  T 200 
R 165  V 201 
L 166  T 202 
R 167  P 203 
S 168  Q 204 
I 169  Q 205 
M 170  V 206 
E 171  F 207 
N 172  N 208 
S 173  A 209 
G 174  V 210 
F 175  C 211 
E 176  H 212 
A 177  M 213 
Y 178  R 214 
S 179  T 215 
TER 
END 
