PFRMAT AL 
TARGET T0054 
AUTHOR 2746-8822-4809 
METHOD SEQFOLD(MSI) IMPLEMENTATION OF FOLD RECOGNITION 
METHOD BASED ON FISCHER AND EISENBERG PROT. SCI. 5, 943, 1996 
METHOD GLOBAL-LOCAL SEQUENCE ALIGNEMENT DRIVEN BY PREDICTED 
METHOD SECONDARY STRUCTURE  
METHOD CONSEQUENTLY - MODELS ARE ALWAYS BASED ON SINGLE SEQUENCE 
METHOD SIGNIFICANCE ANALYSIS BASED ON RANDOM ALIGNMENTS  
MODEL 1 
PARENT 1lnf_E 
F 5     Y 27    
T 6     Y 28    
F 7     Y 29    
L 8     L 30    
D 9     Q 31    
E 10    D 32    
I 11    N 33    
V 12    T 34    
H 13    R 35    
G 14    G 36    
REMARK TAR GAP 3 
V 15    F 40    
R 16    T 41    
W 17    Y 42    
D 18    D 43    
A 19    A 44    
K 20    K 45    
Y 21    Y 46    
A 22    R 47    
T 23    T 48    
REMARK TAR GAP 6 
W 24    W 55    
D 25    A 56    
N 26    D 57    
F 27    A 58    
T 28    D 59    
G 29    N 60    
K 30    Q 61    
P 31    F 62    
V 32    F 63    
D 33    A 64    
G 34    S 65    
Y 35    Y 66    
E 36    D 67    
V 37    A 68    
N 38    P 69    
R 39    A 70    
I 40    V 71    
V 41    D 72    
G 42    A 73    
T 43    H 74    
Y 44    Y 75    
REMARK LONG STRETCH OF UNCERTAIN ALIGNMENT  
Q 85    N 86    
P 86    V 87    
E 87    H 88    
N 88    N 89    
N 89    R 90    
L 90    L 91    
T 91    S 92    
K 92    Y 93    
E 93    D 94    
S 94    G 95    
Y 95    N 96    
Y 96    N 97    
P 97    A 98    
N 98    A 99    
I 99    I 100   
D 100   R 101   
R 101   S 102   
T 102   S 103   
E 103   V 104   
M 104   H 105   
I 105   Y 106   
S 106   S 107   
K 107   Q 108   
G 108   G 109   
Y 109   Y 110   
REMARK REF GAP 3 
K 113   N 111   
S 114   N 112   
S 115   A 113   
H 116   F 114   
S 117   W 115   
R 118   N 116   
G 119   G 117   
S 120   S 118   
A 121   E 119   
I 122   M 120   
REMARK REF GAP 3 
L 126   V 121   
Y 127   Y 122   
R 128   G 123   
L 129   D 124   
D 130   G 125   
T 131   D 126   
G 132   G 127   
E 133   Q 128   
REMARK TAR GAP 1 
L 134   F 130   
V 135   I 131   
P 136   P 132   
M 137   L 133   
G 138   S 134   
S 139   G 135   
R 140   G 136   
F 141   I 137   
D 142   D 138   
F 143   V 139   
M 144   V 140   
D 145   A 141   
E 146   H 142   
R 147   E 143   
S 148   L 144   
H 149   T 145   
H 150   H 146   
A 151   A 147   
A 152   V 148   
N 153   T 149   
G 154   D 150   
I 155   Y 151   
S 156   T 152   
C 157   A 153   
N 158   G 154   
TER 
END 
