 
PFRMAT AL 
TARGET T0053 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: 1aph: BS_30_25% 
REMARK Matrix Used: 1ubw: BS_90_10%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1ubw 
G  237 S   20 
L  238 P   21 
G  239 V   22 
E  240 V   23 
N  241 V   24 
P  242 E   25 
A  243 R   26 
I  244 E   27 
R  245 R   28 
A  246 E   29 
M  247 E   30 
F  248 F   31 
V  249 V   32 
A  250 G   33 
H  251 F   34 
L  252 F   35 
H  253 P   36 
Q  254 Q   37 
A  255 I   38 
L  256 V   39 
N  257 R   40 
M  258 D   41 
A  259 L   42 
V  260 T   43 
E  261 E   44 
E  262 D   45 
A  263 G   46 
A  264 I   47 
TER 
END 
