PFRMAT AL 
TARGET T0053 
AUTHOR 3707-4066-9021 
REMARK FORESST ordered by Z scores, length ratios and J scores using 
REMARK SIMPA with homologues as secondary structure predictions. 
METHOD FORESST is a fold recognition method based on secondary structure 
METHOD predictions and hidden Markov models of observed secondary structures. 
METHOD Di Francesco V, Garnier J and Munson PJ., 1997, Protein Topology  
METHOD recognition METHOD from secondary structure sequences: application  
METHOD of the hidden Markov model to the alpha class proteins.  
METHOD J. Mol. Biol.267:446-463. 
MODEL  1 
PARENT 1tndA 
M   1    A  27 
K   2    R  28 
K   3    T  29 
A   4    V  30 
L   5    K  31 
L   6    L  32 
V   7    L  33 
V   8    L  34 
S   9    L  35 
F  10    G  36 
G  11    A  37 
T  12    G  38 
S  13    E  39 
Y  14    S  40 
H  15    G  41 
D  16    K  42 
T  17    S  43 
C  18    T  44 
E  19    I  45 
K  20    V  46 
N  21    K  47 
I  22    Q  48 
V  23    M  49 
A  24    K  50 
C  25    I  51 
E  26    I  52 
R  27    H  53 
D  28    Q  54 
L  29    D  55 
A  30    G  56 
A  31    Y  57 
S  32    S  58 
C  33    L  59 
P  34    E  60 
D  35    E  61 
R  36    C  62 
D  37    L  63 
L  38    E  64 
R  40    F  65 
A  41    I  66 
F  42    A  67 
T  43    I  68 
S  44    I  69 
G  45    Y  70 
M  46    G  71 
I  47    N  72 
I  48    T  73 
R  49    L  74 
K  50    Q  75 
L  51    S  76 
R  52    I  77 
Q  53    I  89 
R  54    Q  90 
D  55    Y  91 
G  56    G  92 
I  57    D  93 
D  58    S  94 
I  59    A  95 
D  60    R  96 
T  61    Q  97 
P  62    D  98 
L  63    D  99 
Q  64    A  100 
A  65    R  101 
L  66    K  102 
Q  67    L  103 
K  68    M  104 
L  69    H  105 
A  70    M  106 
A  71    A  107 
Q  72    D  108 
G  73    T  109 
Y  74    I  110 
Q  75    E  111 
D  76    E  112 
I  84    G  113 
I  85    T  114 
N  86    M  115 
G  87    P  116 
D  88    K  117 
E  89    E  118 
Y  90    M  119 
E  91    S  120 
K  92    D  121 
I  93    I  122 
V  94    I  123 
R  95    Q  124 
E  96    R  125 
V  97    L  126 
Q  98    W  127 
L  99    K  128 
L 100    S  130 
R 101    G  131 
P 102    I  132 
L 103    Q  133 
F 104    A  134 
T 105    C  135 
R 106    F  136 
L 107    D  137 
T 108    R  138 
L 109    A  139 
G 110    S  140 
V 111    E  141 
P 112    Y  142 
L 113    Q  143 
L 114    L  144 
S 115    N  145 
S 116    D  146 
H 117    S  147 
N 118    A  148 
D 119    G  149 
Y 120    Y  150 
V 121    Y  151 
Q 122    L  152 
L 123    S  153 
M 124    D  154 
Q 125    L  155 
A 126    E  156 
L 127    R  157 
R 128    L  158 
Q 129    V  159 
Q 130    T  160 
M 131    P  161 
P 132    G  162 
S 133    Y  163 
L 134    D  169 
R 135    V  170 
Q 136    L  171 
T 137    R  172 
E 138    S  173 
K 139    N  191 
V 140    F  192 
V 141    R  193 
F 142    M  194 
M 143    F  195 
G 144    D  196 
H 145    V  197 
G 146    G  198 
A 147    G  199 
S 148    Q  200 
H 149    R  201 
H 150    S  202 
A 151    E  203 
F 152    R  204 
A 153    K  205 
A 154    K  206 
Y 155    W  207 
A 156    I  208 
C 157    H  209 
L 158    C  210 
D 159    F  211 
H 160    E  212 
M 161    L  223 
M 162    S  224 
T 163    A  225 
A 164    Y  226 
Q 165    D  227 
R 166    M  228 
F 167    V  229 
P 168    L  230 
A 169    V  231 
R 170    E  232 
V 171    D  233 
G 172    D  234 
A 173    E  235 
V 174    V  236 
E 175    N  237 
S 176    R  238 
Y 177    M  239 
P 178    H  240 
E 179    E  241 
V 180    S  242 
D 181    L  243 
I 182    H  244 
L 183    L  245 
I 184    F  246 
D 185    N  247 
S 186    S  248 
L 187    I  249 
R 188    C  250 
D 189    N  251 
E 190    H  252 
G 191    R  253 
V 192    Y  254 
T 193    F  255 
G 194    A  256 
V 195    T  257 
H 196    T  258 
L 197    S  259 
M 198    I  260 
P 199    V  261 
L 200    L  262 
M 201    F  263 
L 202    L  264 
V 203    N  265 
A 204    K  266 
G 205    I  274 
D 206    K  275 
H 207    K  276 
A 208    A  277 
I 209    H  278 
N 210    L  279 
D 211    S  280 
M 212    I  281 
A 213    C  282 
S 214    F  283 
D 215    P  284 
D 216    D  285 
G 217    Y  286 
D 218    N  287 
S 219    G  288 
F 224    P  289 
N 225    N  290 
A 226    T  291 
A 227    E  305 
G 228    L  306 
I 229    N  307 
P 230    M  308 
A 231    R  309 
T 232    R  310 
P 233    D  311 
W 234    V  312 
L 235    K  313 
S 236    E  314 
G 237    T  320 
L 238    C  321 
G 239    A  322 
E 240    T  323 
N 241    D  324 
P 242    T  325 
A 243    Q  326 
I 244    N  327 
R 245    V  328 
A 246    K  329 
M 247    F  330 
F 248    V  331 
V 249    F  332 
A 250    D  333 
H 251    A  334 
L 252    V  335 
H 253    T  336 
Q 254    D  337 
A 255    I  338 
L 256    I  339 
N 257    I  340 
M 258    K  341 
A 259    E  342 
V 260    N  343 
E 261    L  344 
E 262    K  345 
A 263    D  346 
A 264    L  349 
TER 
END 
