 
PFRMAT AL 
TARGET T0048 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1dcp_G 
H   18 R    7 
V   19 L    8 
S   20 S    9 
D   21 A   10 
E   22 E   11 
E   23 E   12 
L   24 R   13 
P   25 D   14 
V   26 Q   15 
L   27 L   16 
L   28 L   17 
R   29 P   18 
Q   30 N   19 
I   31 L   20 
P   32 R   21 
D   33 A   22 
W   34 V   23 
N   35 G   24 
I   36 W   25 
E   37 N   26 
V   38 E   27 
R   39 L   28 
D   40 E   29 
G   41 G   30 
I   42 R   31 
M   43 D   32 
Q   44 A   33 
L   45 I   34 
E   46 F   35 
K   47 K   36 
V   48 Q   37 
Y   49 F   38 
L   50 H   39 
F   51 F   40 
K   52 K   41 
N   53 D   42 
F   54 F   43 
K   55 N   44 
H   56 R   45 
A   57 A   46 
L   58 F   47 
A   59 G   48 
F   60 F   49 
T   61 M   50 
N   62 T   51 
A   63 R   52 
V   64 V   53 
G   65 A   54 
E   66 L   55 
I   67 Q   56 
S   68 A   57 
E   69 E   58 
A   70 K   59 
E   71 L   60 
G   72 D   61 
H   73 H   62 
H   74 H   63 
P   75 P   64 
G   76 E   65 
L   77 W   66 
L   78 F   67 
T   79 N   68 
E   80 V   69 
W   81 Y   70 
G   82 N   71 
K   83 K   72 
V   84 V   73 
T   85 H   74 
V   86 I   75 
T   87 T   76 
W   88 L   77 
W   89 S   78 
S   90 T   79 
H   91 H   80 
S   92 E   81 
I   93 C   82 
K   94 A   83 
G   95 G   84 
L   96 L   85 
H   97 S   86 
R   98 E   87 
N   99 R   88 
D  100 D   89 
F  101 I   90 
I  102 N   91 
M  103 L   92 
A  104 A   93 
A  105 S   94 
R  106 F   95 
T  107 I   96 
D  108 E   97 
E  109 Q   98 
V  110 V   99 
A  111 A  100 
K  112 V  101 
T  113 S  102 
A  114 M  103 
E  115 T  104 
TER 
END 
